SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001031680
Gene Symbol: RUNX3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.24902608G>T COSM680246 TCGA-66-2757-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1296-3p tCCCCACTCtgccaa GAGUGGGG m8a (m7a->m8a) HPSEF_1432_G1707.1_25229108
hsa-miR-4481 tcCCCACTCtgccaa GGAGUGGG m7b (m6b->m7b) HPSEF_1432_G1707.1_25229108
hsa-miR-4745-5p tcCCCACTCtgccaa UGAGUGGG m7b (m6b->m7b) HPSEF_1432_G1707.1_25229108
hsa-miR-6853-5p tcCCCACGCTgccaa AGCGUGGG m8a Disrupted HPSEF_1432_G1707.1_25229108
hsa-miR-759 tcccCACTCTGCcaa GCAGAGUG m8a Created HPSEF_1432_G1707.1_25229108
hsa-miR-885-3p tccccaCGCTGCCaa AGGCAGCG m7b Disrupted HPSEF_1432_G1707.1_25229108
hsa-miR-1296-3p tCCCCACTCtgccaa GAGUGGGG m8a (m7a->m8a) HPSEF_1432_G1707.1_25229108
hsa-miR-4481 tcCCCACTCtgccaa GGAGUGGG m7b (m6b->m7b) HPSEF_1432_G1707.1_25229108
hsa-miR-4745-5p tcCCCACTCtgccaa UGAGUGGG m7b (m6b->m7b) HPSEF_1432_G1707.1_25229108
hsa-miR-6853-5p tcCCCACGCTgccaa AGCGUGGG m8a Disrupted HPSEF_1432_G1707.1_25229108
hsa-miR-759 tcccCACTCTGCcaa GCAGAGUG m8a Created HPSEF_1432_G1707.1_25229108
hsa-miR-885-3p tccccaCGCTGCCaa AGGCAGCG m7b Disrupted HPSEF_1432_G1707.1_25229108

Mutation Mutation ID Sample Name Cancer Type
chr1:g.24902594C>T COSM3386041 8030340 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-5p accctcATGGAGagc ACUCCAUU m6b Created HPSEF_1432_G1707.1_25229108
hsa-miR-3605-3p accctCACGGAGagc CCUCCGUG m7b Disrupted HPSEF_1432_G1707.1_25229108
hsa-miR-136-5p accctcATGGAGagc ACUCCAUU m6b Created HPSEF_1432_G1707.1_25229108
hsa-miR-3605-3p accctCACGGAGagc CCUCCGUG m7b Disrupted HPSEF_1432_G1707.1_25229108

Mutation Mutation ID Sample Name Cancer Type
chr1:g.24902444C>T COSM3386040 8035633 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1908-5p tacctCCCGCCaccc CGGCGGGG m6b Disrupted HPSEF_1431_G1706.1_25228947
hsa-miR-4459 taCCTCCTGccaccc CCAGGAGG m7b (m6b->m7b) HPSEF_1431_G1706.1_25228947
hsa-miR-4722-5p tacCTCCTGCCaccc GGCAGGAG m8a Created HPSEF_1431_G1706.1_25228947
hsa-miR-4736 tacctCCTGCCaccc AGGCAGGU m6b Created HPSEF_1431_G1706.1_25228947
hsa-miR-4763-3p tacctCCTGCCaccc AGGCAGGG m6b Created HPSEF_1431_G1706.1_25228947
hsa-miR-663a tacctCCCGCCaccc AGGCGGGG m6b Disrupted HPSEF_1431_G1706.1_25228947
hsa-miR-7150 tacctCCTGCCAccc CUGGCAGG m7b Created HPSEF_1431_G1706.1_25228947
hsa-miR-1908-5p tacctCCCGCCaccc CGGCGGGG m6b Disrupted HPSEF_1431_G1706.1_25228947
hsa-miR-4459 taCCTCCTGccaccc CCAGGAGG m7b (m6b->m7b) HPSEF_1431_G1706.1_25228947
hsa-miR-4722-5p tacCTCCTGCCaccc GGCAGGAG m8a Created HPSEF_1431_G1706.1_25228947
hsa-miR-4736 tacctCCTGCCaccc AGGCAGGU m6b Created HPSEF_1431_G1706.1_25228947
hsa-miR-4763-3p tacctCCTGCCaccc AGGCAGGG m6b Created HPSEF_1431_G1706.1_25228947
hsa-miR-663a tacctCCCGCCaccc AGGCGGGG m6b Disrupted HPSEF_1431_G1706.1_25228947
hsa-miR-7150 tacctCCTGCCAccc CUGGCAGG m7b Created HPSEF_1431_G1706.1_25228947

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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