| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| Transcript ID: | NM_001025603 |
|---|---|
| Gene Symbol: | RFX5 |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr1:g.151343733C>T | COSM1295045 | TCGA-BT-A3PH-01 | [urinary_tract][bladder][carcinoma][NS] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-6088 | agcatcTCATCTCTg | AGAGAUGA | m8a | Disrupted | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-1273f | agcatctCATCTCtg | GGAGAUGG | m6b | Disrupted | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4647 | agCATCTTatctctg | GAAGAUGG | m6b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4662b | agCATCTTatctctg | AAAGAUGG | m6b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4426 | agCATCTTatctctg | GAAGAUGG | m6b | Created | HPCB1_3539_G4375.1_151316197 |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr1:g.151343731T>C | COSM4022196 | TCGA-BR-7707-01 | [stomach][NS][carcinoma][adenocarcinoma] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-4756-3p | catctcATCTCTGcc | CCAGAGAU | m7b | Disrupted | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4257 | catctcACCTCTGcc | CCAGAGGU | m7b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-2467-3p | catctcaCCTCTGCc | AGCAGAGG | m7b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4770 | catcTCATCTCtgcc | UGAGAUGA | m7b | Disrupted | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-6088 | catcTCATCTCTgcc | AGAGAUGA | m8a | Disrupted | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-7854-3p | catcTCACCTCtgcc | UGAGGUGA | m7b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-143-3p | catcTCATCTCtgcc | UGAGAUGA | m7b | Disrupted | HPCB1_3539_G4375.1_151316197 |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr1:g.151343723C>T | COSM206006 | TCGA-AA-3518-01 | [large_intestine][caecum][carcinoma][adenocarcinoma] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-4269 | ctcTGCCTGatctgc | GCAGGCAC | m6b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4514 | ctCTGCCTGatctgc | ACAGGCAG | m7b | (m6b->m7b) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-2682-5p | ctCTGCCTGatctgc | CAGGCAGU | m7a | (m6a->m7a) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-1288-5p | ctctgccTGATCTGc | GCAGAUCA | m7b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-6715b-5p | ctcTGCCTGatctgc | ACAGGCAC | m6b | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-7112-5p | ctCTGCCCGatctgc | ACGGGCAG | m7b | (m7b->m6b) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-6893-5p | ctCTGCCTGatctgc | CAGGCAGG | m7a | (m6a->m7a) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-6808-5p | ctCTGCCTGatctgc | CAGGCAGG | m7a | (m6a->m7a) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4692 | ctCTGCCTGAtctgc | UCAGGCAG | m8a | Created | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-6511a-5p | cTCTGCCTGatctgc | CAGGCAGA | m8a | (m7a->m8a) | HPCB1_3539_G4375.1_151316197 |
| hsa-miR-4772-5p | ctctgCCTGATCtgc | UGAUCAGG | m7b | Created | HPCB1_3539_G4375.1_151316197 |