SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001025197
Gene Symbol: CHI3L2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.111230860C>T COSM168742 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3128 attcatTTGCCAGca UCUGGCAA m7b Created HPSEF_596_G719.1_111773458
hsa-miR-3646 aTTCATTTgccagca AAAAUGAA m7b Created HPSEF_596_G719.1_111773458

Mutation Mutation ID Sample Name Cancer Type
chr1:g.111230859T>G COSM3471160 TCGA-FS-A1ZH-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6722-5p tattcaTGCGCCagc AGGCGCAC m6b Created HPSEF_596_G719.1_111773458

Mutation Mutation ID Sample Name Cancer Type
chr1:g.111230766A>G COSM4621973 DLD1 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p gttTGCTGCTttacc UAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-15b-5p gttTGCTGCTttacc UAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-16-5p gttTGCTGCTttacc UAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-195-5p gttTGCTGCTttacc UAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-424-5p gttTGCTGCTttacc CAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-4422 gtttgcTGCTTTacc AAAAGCAU m6b Created HPSEF_595_G718.1_111773381
hsa-miR-497-5p gttTGCTGCTttacc CAGCAGCA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-545-3p gTTTGCTGctttacc UCAGCAAA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-548a-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ab gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ad-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ae-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ak gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548am-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ap-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548aq-5p gtttgcTACTTTacc GAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ar-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548as-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548au-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548av-5p gtttgcTACTTTacc AAAAGUAC m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548ay-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548b-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548bb-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548c-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548d-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548h-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548i gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548j-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548k gtttgcTACTTTacc AAAAGUAC m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548l gtttgcTACTTTacc AAAAGUAU m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548o-5p gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548w gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-548y gtttgcTACTTTacc AAAAGUAA m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-562 gtttGCTACTTTacc AAAGUAGC m8a Disrupted HPSEF_595_G718.1_111773381
hsa-miR-6835-3p gtttgcTGCTTTacc AAAAGCAC m6b Created HPSEF_595_G718.1_111773381
hsa-miR-6838-5p gttTGCTGCTTtacc AAGCAGCA m8a Created HPSEF_595_G718.1_111773381
hsa-miR-8054 gtttgcTACTTTacc GAAAGUAC m6b Disrupted HPSEF_595_G718.1_111773381

Mutation Mutation ID Sample Name Cancer Type
chr1:g.111230747G>A COSM4020604 TCGA-EP-A2KA-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p aggaTCTGCCTacaa GAGGCAGA m7b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-2682-5p aggatCTGCCTacaa CAGGCAGU m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-3529-5p aggaTCTACCTacaa AGGUAGAC m7a Created HPSEF_595_G718.1_111773381
hsa-miR-3927-3p aggaTCTACCTacaa CAGGUAGA m7b Created HPSEF_595_G718.1_111773381
hsa-miR-4650-3p aggaTCTACCTacaa AGGUAGAA m7a Created HPSEF_595_G718.1_111773381
hsa-miR-6511a-5p aggaTCTGCCTacaa CAGGCAGA m7b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-6806-5p aggatcTGCCTACAa UGUAGGCA m8a Disrupted HPSEF_595_G718.1_111773381
hsa-miR-6808-5p aggatCTGCCTacaa CAGGCAGG m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-6831-5p aggaTCTACCTAcaa UAGGUAGA m8a Created HPSEF_595_G718.1_111773381
hsa-miR-6893-5p aggatCTGCCTacaa CAGGCAGG m6b Disrupted HPSEF_595_G718.1_111773381
hsa-miR-940 aggatCTGCCTacaa AAGGCAGG m6b Disrupted HPSEF_595_G718.1_111773381

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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