SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001025
Gene Symbol: RPS23
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277741A>C COSM197104 TCGA-AA-3977-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-296-3p aaggcCAACCCTttt GAGGGUUG m7b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-3936 aaggccACCCCTTtt UAAGGGGU m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-4651 aaggCCACCCCtttt CGGGGUGG m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-608 aaggCCACCCCTttt AGGGGUGG m8a Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-6782-5p aaggcCACCCCTttt UAGGGGUG m7b Created HHRBC_10302_BC3-2of3-SCL_1675

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277731A>T COSM4722682 T2269 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1306-5p cttttGGAGGTGctt CCACCUCC m7b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29a-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29b-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29c-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-519d-5p ctTTTGGAGGtgctt CCUCCAAA m8a Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-1306-5p cttttGGAGGTGctt CCACCUCC m7b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29a-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29b-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-29c-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-519d-5p ctTTTGGAGGtgctt CCUCCAAA m8a Disrupted HHRBC_10302_BC3-2of3-SCL_1675

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277721C>T COSM3139473 TCGA-C5-A1MK-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p tgcttctTATGCAAa UUGCAUAG m7a Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-3653-3p tgCTTCTTAtgcaaa CUAAGAAG m7b (m6b->m7b) HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-448 tgcttctTATGCAAa UUGCAUAU m7a Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-4666b tgcttctCATGCAAa UUGCAUGU m7a Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-5011-3p tgcttctCATGCAaa GUGCAUGG m6b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-6076 tgcttcTCATGCaaa AGCAUGAC m6b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-6797-3p tgcttcTCATGCAaa UGCAUGAC m7a Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-153-3p tgcttctTATGCAAa UUGCAUAG m7a Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-3653-3p tgCTTCTTAtgcaaa CUAAGAAG m7b (m6b->m7b) HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-448 tgcttctTATGCAAa UUGCAUAU m7a Created HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-4666b tgcttctCATGCAAa UUGCAUGU m7a Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-5011-3p tgcttctCATGCAaa GUGCAUGG m6b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-6076 tgcttcTCATGCaaa AGCAUGAC m6b Disrupted HHRBC_10302_BC3-2of3-SCL_1675
hsa-miR-6797-3p tgcttcTCATGCAaa UGCAUGAC m7a Disrupted HHRBC_10302_BC3-2of3-SCL_1675

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277707C>T COSM4827042 TCGA-C5-A1MK-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-3p aAGGAATCgtgctgg GGAUUCCU m7b Disrupted HHRBC_10302_BC3-2of3-SCL_1675

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277695A>G COSM4155910 C0026T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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