SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024956
Gene Symbol: SC5D

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.121307172T>G COSM1351990 TCGA-AZ-4315-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4520-3p tttatCTGTCCAtta UUGGACAG m7b Created HPSEF_4159_G4981.1_121177881
hsa-miR-3688-3p tttatcTTTCCATta UAUGGAAA m7b Disrupted HPSEF_4159_G4981.1_121177881
hsa-miR-3978 tttatCTTTCCAtta GUGGAAAG m7b Disrupted HPSEF_4159_G4981.1_121177881

Mutation Mutation ID Sample Name Cancer Type
chr11:g.121303494T>C COSM924033 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7157-5p acaAATGCTGgtgct UCAGCAUU m7b Created HPSEF_4158_G4980.1_121174202
hsa-miR-1226-3p acaaatGCTGGTGct UCACCAGC m7b Created HPSEF_4158_G4980.1_121174202
hsa-miR-338-3p acaaATGCTGGtgct UCCAGCAU m7b Created HPSEF_4158_G4980.1_121174202
hsa-miR-4310 acaAATGCTGgtgct GCAGCAUU m7b Created HPSEF_4158_G4980.1_121174202
hsa-miR-634 acaaaTGCTGGTgct AACCAGCA m7b Created HPSEF_4158_G4980.1_121174202

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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