SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024843
Gene Symbol: TNRC6B
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40322879C>T COSM4498174 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1193 tACCATCCttgctga GGGAUGGU m7b Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-2392 taCCATCCTtgctga UAGGAUGG m7b (m7b->m6b) HPSEF_14577_G17534.1_40718884
hsa-miR-4426 taCCATCTTtgctga GAAGAUGG m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884
hsa-miR-4647 taCCATCTTtgctga GAAGAUGG m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884
hsa-miR-4662b taCCATCTTTgctga AAAGAUGG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-545-3p taccatcTTTGCTGa UCAGCAAA m7b Created HPSEF_14577_G17534.1_40718884
hsa-miR-1193 tACCATCCttgctga GGGAUGGU m7b Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-2392 taCCATCCTtgctga UAGGAUGG m7b (m7b->m6b) HPSEF_14577_G17534.1_40718884
hsa-miR-4426 taCCATCTTtgctga GAAGAUGG m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884
hsa-miR-4647 taCCATCTTtgctga GAAGAUGG m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884
hsa-miR-4662b taCCATCTTTgctga AAAGAUGG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-545-3p taccatcTTTGCTGa UCAGCAAA m7b Created HPSEF_14577_G17534.1_40718884

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40322873A>G COSM1230025 587220 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1193 aaacactACCATCCt GGGAUGGU m7b Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-142-3p aaACACTACcatcct UGUAGUGU m7b (m7b->m6b) HPSEF_14577_G17534.1_40718884
hsa-miR-34a-5p aaaCACTGCCAtcct UGGCAGUG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-34c-5p aaaCACTGCCatcct AGGCAGUG m7b Created HPSEF_14577_G17534.1_40718884
hsa-miR-449a aaaCACTGCCAtcct UGGCAGUG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-449b-5p aaaCACTGCCatcct AGGCAGUG m7b Created HPSEF_14577_G17534.1_40718884
hsa-miR-6073 aaaCACTACCatcct GGUAGUGA m7a Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-6499-3p aaACACTGCcatcct AGCAGUGU m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884
hsa-miR-1193 aaacactACCATCCt GGGAUGGU m7b Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-142-3p aaACACTACcatcct UGUAGUGU m7b (m7b->m6b) HPSEF_14577_G17534.1_40718884
hsa-miR-34a-5p aaaCACTGCCAtcct UGGCAGUG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-34c-5p aaaCACTGCCatcct AGGCAGUG m7b Created HPSEF_14577_G17534.1_40718884
hsa-miR-449a aaaCACTGCCAtcct UGGCAGUG m8a Created HPSEF_14577_G17534.1_40718884
hsa-miR-449b-5p aaaCACTGCCatcct AGGCAGUG m7b Created HPSEF_14577_G17534.1_40718884
hsa-miR-6073 aaaCACTACCatcct GGUAGUGA m7a Disrupted HPSEF_14577_G17534.1_40718884
hsa-miR-6499-3p aaACACTGCcatcct AGCAGUGU m7b (m6b->m7b) HPSEF_14577_G17534.1_40718884

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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