SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024809
Gene Symbol: RARA
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.40352399C>G COSM96173 103446 [breast][NS][carcinoma][basal_(triple-negative)_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3165 tcTCCACCaagtgca AGGUGGAU m6b Disrupted HPSEF_9520_G11442.1_38508653
hsa-miR-3614-5p tctccaCCAAGTGca CCACUUGG m7b Disrupted HPSEF_9520_G11442.1_38508653
hsa-miR-3677-3p tctCCACGAagtgca CUCGUGGG m6b Created HPSEF_9520_G11442.1_38508653
hsa-miR-6880-5p tCTCCACCAagtgca UGGUGGAG m8a (m8a->m7a) HPSEF_9520_G11442.1_38508653
hsa-miR-7847-3p tCTCCACGaagtgca CGUGGAGG m7a Created HPSEF_9520_G11442.1_38508653
Mutation Mutation ID Sample Name Cancer Type
chr17:g.40352350G>A COSM4995738 NPC23F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr17:g.40352344A>G COSM472729 TCGA-CW-5589-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1200 agCTCAGGAcaacgt CUCCUGAG m7b (m6b->m7b) HPSEF_9519_G11441.1_38508610
hsa-miR-2355-3p agctcAGGACAAcgt AUUGUCCU m7b Created HPSEF_9519_G11441.1_38508610
hsa-miR-4273 agctcAGAACAacgt GUGUUCUC m6b Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-4303 aGCTCAGAAcaacgt UUCUGAGC m8a (m8a->m7a) HPSEF_9519_G11441.1_38508610
hsa-miR-4324 agCTCAGGacaacgt CCCUGAGA m6b Created HPSEF_9519_G11441.1_38508610
hsa-miR-544b agCTCAGGacaacgt ACCUGAGG m6b Created HPSEF_9519_G11441.1_38508610
hsa-miR-6739-3p agctcAGAACAAcgt AUUGUUCU m7b Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-676-3p agctcAGGACAacgt CUGUCCUA m6b Created HPSEF_9519_G11441.1_38508610

Mutation Mutation ID Sample Name Cancer Type
chr17:g.40352341C>T COSM3517016 TCGA-ER-A2NG-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p aacaGCTCAGaacaa CCUGAGCC m6b Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-320e aaCAGCTTagaacaa AAAGCUGG m6b Created HPSEF_9519_G11441.1_38508610
hsa-miR-4263 aacagCTTAGAAcaa AUUCUAAG m7b Created HPSEF_9519_G11441.1_38508610
hsa-miR-4303 aacaGCTCAGAAcaa UUCUGAGC m8a Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-6751-3p aacaGCTCAGaacaa ACUGAGCC m6b Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-1199-5p aacaGCTCAGaacaa CCUGAGCC m6b Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-320e aaCAGCTTagaacaa AAAGCUGG m6b Created HPSEF_9519_G11441.1_38508610
hsa-miR-4263 aacagCTTAGAAcaa AUUCUAAG m7b Created HPSEF_9519_G11441.1_38508610
hsa-miR-4303 aacaGCTCAGAAcaa UUCUGAGC m8a Disrupted HPSEF_9519_G11441.1_38508610
hsa-miR-6751-3p aacaGCTCAGaacaa ACUGAGCC m6b Disrupted HPSEF_9519_G11441.1_38508610

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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