SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001014765
Gene Symbol: FBXO44

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655956A>G COSM4021072 TCGA-FP-A4BE-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-412-5p ggacctcGTCGACCt UGGUCGAC m7b Created HPSLB_20_G26.1_11716015
Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655955C>A COSM4021071 TCGA-HU-8610-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655954T>C COSM3399580 TCGA-06-0939-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4281 CGGGACCCcatcgac GGGUCCCG m8a Created HPSLB_20_G26.1_11716015
hsa-miR-615-5p cgGGACCCCatcgac GGGGGUCC m7b (m6b->m7b) HPSLB_20_G26.1_11716015
hsa-miR-6890-5p cgggACCCCATcgac CAUGGGGU m7b Created HPSLB_20_G26.1_11716015
hsa-miR-7704 cggGACCCCatcgac CGGGGUCG m6b Created HPSLB_20_G26.1_11716015

Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655948G>A COSM4021070 TCGA-BR-4257-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4258 ctcTGGCGGGacctc CCCCGCCA m7b Disrupted HPSLB_20_G26.1_11716015
hsa-miR-4281 ctctggCGGGACCtc GGGUCCCG m7b Disrupted HPSLB_20_G26.1_11716015
hsa-miR-4722-3p ctcTGGCAGGacctc ACCUGCCA m7b Created HPSLB_20_G26.1_11716015
hsa-miR-6727-3p ctcTGGCAGGAcctc UCCUGCCA m8a Created HPSLB_20_G26.1_11716015
hsa-miR-7108-3p ctctGGCGGGacctc ACCCGCCC m6b Disrupted HPSLB_20_G26.1_11716015

Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655941C>T COSM1747661 B83 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-485-5p ctgCAGCCTCTggcg AGAGGCUG m8a Disrupted HPSLB_20_G26.1_11716015
hsa-miR-6884-5p ctgCAGCCTCTggcg AGAGGCUG m8a Disrupted HPSLB_20_G26.1_11716015

Mutation Mutation ID Sample Name Cancer Type
chr1:g.11655934C>T COSM4515158 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-3p gcctgGTCTGCAGcc CUGCAGAC m8a Disrupted HPSLB_20_G26.1_11716015
hsa-miR-3158-5p gcctggTCTGCAGcc CCUGCAGA m7b Disrupted HPSLB_20_G26.1_11716015
hsa-miR-3166 gcctgGTCTGCagcc CGCAGACA m6b Disrupted HPSLB_20_G26.1_11716015
hsa-miR-4771 gcctgGTCTGCagcc AGCAGACU m6b Disrupted HPSLB_20_G26.1_11716015
hsa-miR-6715a-3p gccTGGTTTGcagcc CCAAACCA m7b Created HPSLB_20_G26.1_11716015

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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