SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013631
Gene Symbol: HNRNPCL1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847797G>A COSM2229371 CSCC-7-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3160-5p taagagtAGAAAGCg GGCUUUCU m7b Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-3692-3p taagaGTGGAAagcg GUUCCACA m6b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4436b-5p taagAGTGGAaagcg GUCCACUU m6b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6509-3p taagAGTGGAAagcg UUCCACUG m7a Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6777-3p taAGAGTGGAaagcg UCCACUCU m8a Disrupted HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847796G>A COSM2229370 TCGA-GN-A266-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3692-3p aagaGTGGAAagcgg GUUCCACA m6b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4315 aagagtgGAAAGCGg CCGCUUUC m7b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4436b-5p aagAGTGGAaagcgg GUCCACUU m6b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4639-3p aAGAGTGAaaagcgg UCACUCUC m7a Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-5096 aagaGTGAAAagcgg GUUUCACC m6b Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6509-3p aagAGTGGAAagcgg UUCCACUG m7a Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6777-3p aAGAGTGGAaagcgg UCCACUCU m8a (m8a->m7a) HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6794-3p aAGAGTGAaaagcgg CUCACUCU m7b Created HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847791C>T COSM181112 TCGA-B5-A11H-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4286 tggaaAGTGGGGatc ACCCCACU m7b Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4315 tgGAAAGCGGggatc CCGCUUUC m8a Disrupted HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847791C>A COSM528081 TCGA-49-6743-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p tgGAAAGAGgggatc ACUCUUUC m7b (m6b->m7b) HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-4315 tgGAAAGCGGggatc CCGCUUUC m8a Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6795-3p tggaaaGAGGGGatc ACCCCUCG m6b Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6826-3p tggaaaGAGGGGAtc CUCCCCUC m7b Created HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847790G>A COSM3472671 TCGA-FS-A4F0-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4315 gGAAAGCGGggatct CCGCUUUC m8a (m8a->m7a) HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6893-3p ggaaAGCAGGGatct CCCUGCUG m7a Created HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847788G>A COSM3862482 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3156-5p aaagcggAGATCTTc AAAGAUCU m7b Created HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847780C>T COSM3996797 SNUH_G76_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p gATCTTCTaagtctg AGAAGAUU m7a Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-5197-3p gaTCTTCTaagtctg AAGAAGAG m6b Created HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-6077 gaTCTTCCaagtctg GGGAAGAG m6b Disrupted HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-7-5p gaTCTTCCAagtctg UGGAAGAC m7a (m7a->m6a) HHRBC_102_BC3-2of3-SCL_11749
hsa-miR-890 gatctTCCAAGTctg UACUUGGA m7b Disrupted HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847767T>C COSM4595259 Detroit_562 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1305 tggaaaGTTGAAAgg UUUUCAAC m7b Disrupted HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847759T>A COSM4595261 Detroit_562 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6782-3p tgAAAGGTGatgacc CACCUUUG m7a (m7a->m6a) HHRBC_102_BC3-2of3-SCL_11749

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847703C>A COSM275478 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p gtggatTCTCTCCtg UGGAGAGA m7b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-3123 gtggATTCTCTcctg CAGAGAAU m7b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-4306 gtggatTCTCTCCtg UGGAGAGA m7b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-4644 gtggatTCTCTCCtg UGGAGAGA m7b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-6888-5p gtggattATCTCCTg AAGGAGAU m7b Created HHRBC_101_BC3-2of3-SCL_9538

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847686G>A COSM4402781 TCGA-D9-A6EC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-3p aaacCTGAAAaaaat CUUUCAGU m6b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-30d-3p aaacCTGAAAaaaat CUUUCAGU m6b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-30e-3p aaacCTGAAAaaaat CUUUCAGU m6b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-3180-5p aaacCTGGAAaaaat CUUCCAGA m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-335-3p aaaccTGAAAAAaat UUUUUCAU m7a Created HHRBC_101_BC3-2of3-SCL_9538

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847680A>G COSM1626369 RK021_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1305 ggaaaaaGTTGAAAa UUUUCAAC m7b Created HHRBC_101_BC3-2of3-SCL_9538

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847666G>T COSM4142341 PTC-14C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-26b-3p agGAACAGagcaaac CCUGUUCU m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-31-3p aggaaCATAGCAaac UGCUAUGC m7a Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-3194-3p aggaaCAGAGCaaac AGCUCUGC m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-5691 aggaaCAGAGCAAac UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-6805-3p aggaaCAGAGCAAac UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847665A>T COSM2229364 PTC-14C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1208 ggAACAGTGcaaaca UCACUGUU m7b (m6b->m7b) HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-3194-3p ggaaCAGAGCaaaca AGCUCUGC m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-4325 ggaacAGTGCAAaca UUGCACUU m7a Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-507 ggaacaGTGCAAAca UUUUGCAC m7b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-557 ggaacaGTGCAAACa GUUUGCAC m8a Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-5691 ggaaCAGAGCAAaca UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-6805-3p ggaaCAGAGCAAaca UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-7703 ggaacAGTGCAAaca UUGCACUC m7a Created HHRBC_101_BC3-2of3-SCL_9538

Mutation Mutation ID Sample Name Cancer Type
chr1:g.12847664GAG>TTG COSM97000 1946219 [lung][NS][carcinoma][non_small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-3p aggaaCATTGCAaacaa CUGCAAUG m7b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-26b-3p agGAACAGagcaaacaa CCUGUUCU m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-3194-3p aggaaCAGAGCaaacaa AGCUCUGC m6b Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-450b-5p aggaacaTTGCAAAcaa UUUUGCAA m7b Created HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-5691 aggaaCAGAGCAAacaa UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538
hsa-miR-6805-3p aggaaCAGAGCAAacaa UUGCUCUG m8a Disrupted HHRBC_101_BC3-2of3-SCL_9538

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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