SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013438
Gene Symbol: FXR1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.180977139A>C COSN8488763 J88_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-520g-3p gtaaataCACTTTGa ACAAAGUG m7b Created HPSEF_15464_G18625.1_180694932
hsa-miR-520h gtaaataCACTTTGa ACAAAGUG m7b Created HPSEF_15464_G18625.1_180694932
hsa-miR-561-3p gtaaatAAACTTTGa CAAAGUUU m8a Disrupted HPSEF_15464_G18625.1_180694932
hsa-miR-93-5p gtaaataCACTTTGa CAAAGUGC m7a Created HPSEF_15464_G18625.1_180694932
hsa-miR-17-5p gtaaataCACTTTGa CAAAGUGC m7a Created HPSEF_15464_G18625.1_180694932
hsa-miR-20b-5p gtaaataCACTTTGa CAAAGUGC m7a Created HPSEF_15464_G18625.1_180694932
hsa-miR-223-5p gtaAATACACtttga CGUGUAUU m7b Created HPSEF_15464_G18625.1_180694932
hsa-miR-3609 gtaaataCACTTTGa CAAAGUGA m7a Created HPSEF_15464_G18625.1_180694932
hsa-miR-519d-3p gtaaataCACTTTGa CAAAGUGC m7a Created HPSEF_15464_G18625.1_180694932

Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912733C>T COSM3774743 TCGA-BT-A2LB-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3200-3p ctttctaCAAGGTac CACCUUGC m6b Disrupted HPSEF_15459_G18620.1_180630514
hsa-miR-3674 cttTCTACAAggtac AUUGUAGA m7b Disrupted HPSEF_15459_G18620.1_180630514
hsa-miR-6813-3p ctttctaCAAGGTac AACCUUGG m6b Disrupted HPSEF_15459_G18620.1_180630514
Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912723G>T COSM729710 TCGA-66-2759-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912714G>T COSM357352 LUAD-CHTN-3090415 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 gttcgcgTCTCTAAc UUUAGAGA m7b Created HPSEF_15459_G18620.1_180630514

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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