SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013251
Gene Symbol: SLC3A2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.62888464G>A COSM193660 TCGA-AA-3554-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5693 tatatccGCCACTGg GCAGUGGC m7b Disrupted HPTA1_2131_G2959.1_62655936
hsa-miR-8071 tataTCCACCactgg CGGUGGAC m6b Created HPTA1_2131_G2959.1_62655936
hsa-miR-25-5p tataTCCGCCactgg AGGCGGAG m6b Disrupted HPTA1_2131_G2959.1_62655936
hsa-miR-3165 tatATCCACCactgg AGGUGGAU m7b Created HPTA1_2131_G2959.1_62655936
hsa-miR-376b-5p taTATCCACcactgg CGUGGAUA m7b (m6b->m7b) HPTA1_2131_G2959.1_62655936
hsa-miR-376c-5p taTATCCACCactgg GGUGGAUA m8a Created HPTA1_2131_G2959.1_62655936
hsa-miR-4730 tataTCCGCCActgg CUGGCGGA m7b Disrupted HPTA1_2131_G2959.1_62655936

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser