SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012514
Gene Symbol: ITM2C

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.230876961C>T COSM1017681 TCGA-D1-A167-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p tcatgAATGTGAAgg UUCACAUU m8a Created HPCB3_12841_G17470.1_231741673
hsa-miR-181a-5p tcaTGAATGTgaagg AACAUUCA m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-181b-5p tcaTGAATGTgaagg AACAUUCA m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-181c-5p tcaTGAATGTgaagg AACAUUCA m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-181d-5p tcaTGAATGTgaagg AACAUUCA m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-23a-3p tcatgAATGTGAagg AUCACAUU m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-23b-3p tcatgAATGTGAagg AUCACAUU m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-23c tcatgAATGTGAagg AUCACAUU m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-4262 tcaTGAATGTgaagg GACAUUCA m7b Created HPCB3_12841_G17470.1_231741673

Mutation Mutation ID Sample Name Cancer Type
chr2:g.230876952C>T COSM4499617 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1253 gggagCTTCTCatga AGAGAAGA m6b Created HPCB3_12841_G17470.1_231741673
hsa-miR-28-5p gggAGCTCCTcatga AAGGAGCU m7b Disrupted HPCB3_12841_G17470.1_231741673
hsa-miR-3139 gggAGCTCCTcatga UAGGAGCU m7b Disrupted HPCB3_12841_G17470.1_231741673
hsa-miR-3928-5p ggGAGCTTCtcatga UGAAGCUC m7b (m6b->m7b) HPCB3_12841_G17470.1_231741673
hsa-miR-4689 gggagCTCCTCAtga UUGAGGAG m7b Disrupted HPCB3_12841_G17470.1_231741673
hsa-miR-6806-3p ggGAGCTTCtcatga UGAAGCUC m7b (m6b->m7b) HPCB3_12841_G17470.1_231741673
hsa-miR-6858-5p gggagCTCCTCAtga GUGAGGAG m7b Disrupted HPCB3_12841_G17470.1_231741673
hsa-miR-708-5p gggAGCTCCTcatga AAGGAGCU m7b Disrupted HPCB3_12841_G17470.1_231741673

Mutation Mutation ID Sample Name Cancer Type
chr2:g.230876947G>T COSM362105 LUAD-CHTN-Z4716A [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4633-3p cttctggTAGCTCCt AGGAGCUA m7b Created HPCB3_12841_G17470.1_231741673
hsa-miR-6500-5p cttctggTAGCTCCt AGGAGCUA m7b Created HPCB3_12841_G17470.1_231741673

Mutation Mutation ID Sample Name Cancer Type
chr2:g.230876944T>G COSM1494890 TCGA-B0-5098-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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