SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012279
Gene Symbol: SOGA3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127473342C>T COSM739306 TCGA-18-3409-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548a-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548au-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548as-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ar-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548aq-5p ttttcaTTACTTTCt GAAAGUAA m8a Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ap-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548am-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ak ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ah-5p ttttcaTCACTTTct AAAAGUGA m7b Disrupted HPSLC_17534_G20841.1_127794476
hsa-miR-548ae-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ad-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ab ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-559 ttttcaTTACTTTct UAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548y ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548w ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548o-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548j-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548i ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548h-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548d-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548c-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548bb-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548b-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-548ay-5p ttttcaTTACTTTct AAAAGUAA m7b Created HPSLC_17534_G20841.1_127794476
hsa-miR-3609 ttttcaTCACTTTct CAAAGUGA m7b Disrupted HPSLC_17534_G20841.1_127794476

Mutation Mutation ID Sample Name Cancer Type
chr6:g.127473340C>A COSM1073013 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3609 ttcaTCACTTTctta CAAAGUGA m7b Disrupted HPSLC_17534_G20841.1_127794476
hsa-miR-548ah-5p ttcaTCACTTTctta AAAAGUGA m7b Disrupted HPSLC_17534_G20841.1_127794476

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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