SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010924
Gene Symbol: FAM171A1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213732C>T COSM916693 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4520-2-3p gagcTGTCCAAtccc UUUGGACA m7b Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-4520-3p gagCTGTCCAAtccc UUGGACAG m8a Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-4520-2-3p gagcTGTCCAAtccc UUUGGACA m7b Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-4520-3p gagCTGTCCAAtccc UUGGACAG m8a Disrupted HPTK1_4835_G5664.1_15255720

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213717G>A COSM3436183 TCGA-EE-A2MR-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1307-3p catGCCGAGatcttc ACUCGGCG m6b Created HPTK1_4835_G5664.1_15255720
hsa-miR-3156-5p catgccgAGATCTTc AAAGAUCU m7b Created HPTK1_4835_G5664.1_15255720
hsa-miR-4304 CATGCCGGgatcttc CCGGCAUG m8a Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-4638-5p catGCCGAGatcttc ACUCGGCU m6b Created HPTK1_4835_G5664.1_15255720
hsa-miR-1307-3p catGCCGAGatcttc ACUCGGCG m6b Created HPTK1_4835_G5664.1_15255720
hsa-miR-3156-5p catgccgAGATCTTc AAAGAUCU m7b Created HPTK1_4835_G5664.1_15255720
hsa-miR-4304 CATGCCGGgatcttc CCGGCAUG m8a Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-4638-5p catGCCGAGatcttc ACUCGGCU m6b Created HPTK1_4835_G5664.1_15255720

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213714T>A COSM3665626 HCC103T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6077 gccgggaTCTTCCCa GGGAAGAG m7a Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-6077 gccgggaTCTTCCCa GGGAAGAG m7a Disrupted HPTK1_4835_G5664.1_15255720

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213702C>T COSM3436182 TCGA-EE-A20F-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3934-5p ccACACCTGtcctca UCAGGUGU m7b (m6b->m7b) HPTK1_4835_G5664.1_15255720
hsa-miR-4455 cCACACCCgtcctca AGGGUGUG m7b Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-5004-5p ccacaccTGTCCTCa UGAGGACA m7b Created HPTK1_4835_G5664.1_15255720
hsa-miR-552-3p ccaCACCTGTcctca AACAGGUG m7b Created HPTK1_4835_G5664.1_15255720
hsa-miR-3934-5p ccACACCTGtcctca UCAGGUGU m7b (m6b->m7b) HPTK1_4835_G5664.1_15255720
hsa-miR-4455 cCACACCCgtcctca AGGGUGUG m7b Disrupted HPTK1_4835_G5664.1_15255720
hsa-miR-5004-5p ccacaccTGTCCTCa UGAGGACA m7b Created HPTK1_4835_G5664.1_15255720
hsa-miR-552-3p ccaCACCTGTcctca AACAGGUG m7b Created HPTK1_4835_G5664.1_15255720

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15212922T>A COSM4013014 TCGA-HU-A4GU-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-33a-3p tttAACATTaaatga CAAUGUUU m6b Disrupted HPTK1_4834_G5663.2_15254916
hsa-miR-409-3p tttAACATTaaatga GAAUGUUG m6b Disrupted HPTK1_4834_G5663.2_15254916
hsa-miR-4729 tttaacaATAAATGa UCAUUUAU m7b Created HPTK1_4834_G5663.2_15254916
hsa-miR-5701 tttaACAATAAatga UUAUUGUC m7a Created HPTK1_4834_G5663.2_15254916
hsa-miR-33a-3p tttAACATTaaatga CAAUGUUU m6b Disrupted HPTK1_4834_G5663.2_15254916
hsa-miR-409-3p tttAACATTaaatga GAAUGUUG m6b Disrupted HPTK1_4834_G5663.2_15254916
hsa-miR-4729 tttaacaATAAATGa UCAUUUAU m7b Created HPTK1_4834_G5663.2_15254916
hsa-miR-5701 tttaACAATAAatga UUAUUGUC m7a Created HPTK1_4834_G5663.2_15254916

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15211666A>T COSN4692442 PD3904a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6083 aattcaATATAAact CUUAUAUC m6b Created HPTK1_4824_G5654.1_15253663

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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