SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010924
Gene Symbol: FAM171A1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.15214526C>G COSM1504985 TCGA-55-7227-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3663-5p aaagAGACCAGtcca GCUGGUCU m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-1288-3p aaagagaGCAGTCCa UGGACUGC m7b Created HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-4515 aaagagaCCAGTCCa AGGACUGG m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-6848-3p aaaGAGACCAgtcca GUGGUCUC m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-6843-3p aaaGAGACCAgtcca AUGGUCUC m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-6848-3p aaaGAGACCAgtcca GUGGUCUC m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-6843-3p aaaGAGACCAgtcca AUGGUCUC m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-1288-3p aaagagaGCAGTCCa UGGACUGC m7b Created HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-3663-5p aaagAGACCAGtcca GCUGGUCU m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963
hsa-miR-4515 aaagagaCCAGTCCa AGGACUGG m7b Disrupted HHKTA_38132_NM_001010924|1068|1107|1.99032528838083|0.693738440861963

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15212270G>A COSN6528311 ICGC_MB101 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-218-1-3p aGGAACCActgagtg AUGGUUCC m7b Created HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963
hsa-miR-203a-5p agGAACCACTgagtg AGUGGUUC m8a Created HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963
hsa-miR-194-3p aggaaCCACTGagtg CCAGUGGG m6b Created HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963
hsa-miR-140-5p aggAACCACTGagtg CAGUGGUU m8a Created HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963
hsa-miR-5693 aggaaCCACTGagtg GCAGUGGC m6b Created HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963
hsa-miR-512-5p aggaaccGCTGAGTg CACUCAGC m7b Disrupted HHKTA_24697_NM_001010924|3304|3343|2.98548793257124|0.693738440861963

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15211666A>T COSN4692442 PD3904a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6083 aattcaATATAAact CUUAUAUC m6b Created HHKTA_23523_NM_001010924|3908|3947|3.11529175572651|0.693738440861963

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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