SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001009894
Gene Symbol: C12orf29

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.88045623C>T COSM4045253 TCGA-CD-A4MG-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1202 ttGCTGGCAttcctc GUGCCAGC m7b (m7b->m6b) HPCB3_5126_G7023.1_88439398
hsa-miR-3972 ttGCTGGCAttcctc CUGCCAGC m7b (m7b->m6b) HPCB3_5126_G7023.1_88439398
hsa-miR-634 tTGCTGGTattcctc AACCAGCA m7b Created HPCB3_5126_G7023.1_88439398

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88045622G>T COSM1163023 PA285 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3120-3p aTTGCTGTcattcct CACAGCAA m7b Created HPCB3_5126_G7023.1_88439398
hsa-miR-3194-5p attGCTGGCattcct GGCCAGCC m6b Disrupted HPCB3_5126_G7023.1_88439398
hsa-miR-1202 attGCTGGCAttcct GUGCCAGC m7b Disrupted HPCB3_5126_G7023.1_88439398
hsa-miR-3972 attGCTGGCAttcct CUGCCAGC m7b Disrupted HPCB3_5126_G7023.1_88439398

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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