SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001008661
Gene Symbol: CCBL2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.88964852G>A COSM3361036 TCGA-BP-4762-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273e catTCAAGCAttaat UUGCUUGA m7b Disrupted HPCB3_1641_G2252.1_89430539
hsa-miR-4307 cattcAAACATTaat AAUGUUUU m7a Created HPCB3_1641_G2252.1_89430539
hsa-miR-409-3p cattcaAACATTaat GAAUGUUG m6b Created HPCB3_1641_G2252.1_89430539
hsa-miR-33a-3p cattcAAACATTaat CAAUGUUU m7b Created HPCB3_1641_G2252.1_89430539
hsa-miR-155-5p cattcaAGCATTAAt UUAAUGCU m8a Disrupted HPCB3_1641_G2252.1_89430539
hsa-miR-1273e catTCAAGCAttaat UUGCUUGA m7b Disrupted HPCB3_1641_G2252.1_89430539
hsa-miR-4307 cattcAAACATTaat AAUGUUUU m7a Created HPCB3_1641_G2252.1_89430539
hsa-miR-409-3p cattcaAACATTaat GAAUGUUG m6b Created HPCB3_1641_G2252.1_89430539
hsa-miR-33a-3p cattcAAACATTaat CAAUGUUU m7b Created HPCB3_1641_G2252.1_89430539
hsa-miR-155-5p cattcaAGCATTAAt UUAAUGCU m8a Disrupted HPCB3_1641_G2252.1_89430539

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser