SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007227
Gene Symbol: SPOP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.49622043A>T COSM4931966 TCGA-UB-A7MB-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125b-2-3p ctcctACTTGTGgac UCACAAGU m7b Created HPCB3_9819_G13471.1_47699401
hsa-miR-5697 ctcCTACTTGtggac UCAAGUAG m7b Created HPCB3_9819_G13471.1_47699401

Mutation Mutation ID Sample Name Cancer Type
chr17:g.49622038G>A COSM3723696 537 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-758-5p acatgtgAACCATCa GAUGGUUG m7a Created HPCB3_9819_G13471.1_47699401
hsa-miR-8069 acatgtgAACCATCa GGAUGGUU m7b Created HPCB3_9819_G13471.1_47699401
hsa-miR-218-2-3p acatgtGAACCATca CAUGGUUC m7b Created HPCB3_9819_G13471.1_47699401
hsa-miR-23a-3p acATGTGAaccatca AUCACAUU m6b Created HPCB3_9819_G13471.1_47699401
hsa-miR-23b-3p acATGTGAaccatca AUCACAUU m6b Created HPCB3_9819_G13471.1_47699401
hsa-miR-23c acATGTGAaccatca AUCACAUU m6b Created HPCB3_9819_G13471.1_47699401

Mutation Mutation ID Sample Name Cancer Type
chr17:g.49611432A>G COSM95271 100912 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4728-3p tctgTCAGCATttct CAUGCUGA m7b Created HPCB3_9818_G13469.1_47688784
hsa-miR-4526 tCTGTCAGCatttct GCUGACAG m8a (m7a->m8a) HPCB3_9818_G13469.1_47688784
hsa-miR-409-3p tctgtCAACATTtct GAAUGUUG m7b Disrupted HPCB3_9818_G13469.1_47688784
hsa-miR-3660 tCTGTCAGcatttct ACUGACAG m7b Created HPCB3_9818_G13469.1_47688784
hsa-miR-628-5p tctGTCAGCATttct AUGCUGAC m8a Created HPCB3_9818_G13469.1_47688784

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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