SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007026
Gene Symbol: ATN1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940941C>T COSM695263 TCGA-60-2709-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4713-3p cccGGATCCCctacc UGGGAUCC m7b Disrupted HPRO8_3346_G4361.1_7050097
hsa-miR-9500 cccggaTTCCCTacc AAGGGAAG m6b Created HPRO8_3346_G4361.1_7050097
hsa-miR-6824-5p cccggaTCCCCTACc GUAGGGGA m8a Disrupted HPRO8_3346_G4361.1_7050097
hsa-miR-6822-5p cccggaTTCCCTacc CAGGGAAC m6b Created HPRO8_3346_G4361.1_7050097
hsa-miR-6750-5p cccggaTTCCCTacc CAGGGAAC m6b Created HPRO8_3346_G4361.1_7050097
hsa-miR-5584-5p cccggaTTCCCTacc CAGGGAAA m6b Created HPRO8_3346_G4361.1_7050097

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940936C>A COSM943090 TCGA-D1-A163-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4490 ccTTACCAGgatccc UCUGGUAA m7b (m6b->m7b) HPRO8_3346_G4361.1_7050097
hsa-miR-555 cCTTACCCggatccc AGGGUAAG m7b Disrupted HPRO8_3346_G4361.1_7050097

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940925C>T COSM2100264 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4725-5p tCAGGGTCTcacctt AGACCCUG m8a (m8a->m7a) HPRO8_3346_G4361.1_7050097
hsa-miR-504-5p tCAGGGTCTcacctt AGACCCUG m8a (m8a->m7a) HPRO8_3346_G4361.1_7050097
hsa-miR-6732-3p tCAGGGTTtcacctt UAACCCUG m7b Created HPRO8_3346_G4361.1_7050097

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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