SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007026
Gene Symbol: ATN1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.6936722A>C COSM4210949 RMS106_ [soft_tissue][striated_muscle][rhabdomyosarcoma][alveolar]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-133a-5p accagcACCAGCaac AGCUGGUA m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-138-5p accagCACCAGCaac AGCUGGUG m7b Created HPCB3_4559_G6297.1_7045866
hsa-miR-367-5p accaGCAACAGcaac ACUGUUGC m7b Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-3907 accAGCACCagcaac AGGUGCUC m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-4299 accagCACCAGCaac GCUGGUGA m7a Created HPCB3_4559_G6297.1_7045866
hsa-miR-6131 accagcACCAGCaac GGCUGGUC m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-548q accaGCACCAGCaac GCUGGUGC m8a Created HPCB3_4559_G6297.1_7045866

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6936716C>A COSM4995175 NPC18F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548q atcacCACCAGCaac GCUGGUGC m7a Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-6131 atcaccACCAGCaac GGCUGGUC m6b Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-133a-5p atcaccACCAGCaac AGCUGGUA m6b Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-138-5p atcacCACCAGCaac AGCUGGUG m7b Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-323a-5p atcACCACCagcaac AGGUGGUC m6b Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-4299 atcacCACCAGCaac GCUGGUGA m7a Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-4456 atcaCCACCAGcaac CCUGGUGG m7b Disrupted HPCB3_4559_G6297.1_7045866

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6936697C>T COSM4990299 S09-31237-TP [skin][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4432 ccAGTCTTaacacat AAAGACUC m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-3672 ccAGTCTCAacacat AUGAGACU m7b (m7b->m6b) HPCB3_4559_G6297.1_7045866
hsa-miR-208b-3p ccaGTCTTAacacat AUAAGACG m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-208a-3p ccaGTCTTAacacat AUAAGACG m6b Created HPCB3_4559_G6297.1_7045866
hsa-miR-2053 ccagtcTTAACACat GUGUUAAU m7a Created HPCB3_4559_G6297.1_7045866
hsa-miR-499a-5p ccAGTCTTAAcacat UUAAGACU m8a Created HPCB3_4559_G6297.1_7045866
hsa-miR-653-5p ccagtcTCAACACat GUGUUGAA m7a Disrupted HPCB3_4559_G6297.1_7045866
hsa-miR-6864-3p ccAGTCTCAacacat GUGAGACU m7b (m7b->m6b) HPCB3_4559_G6297.1_7045866
hsa-miR-8087 ccAGTCTTaacacat GAAGACUU m6b Created HPCB3_4559_G6297.1_7045866

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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