SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001006658
Gene Symbol: CR2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.207475098C>T COSM4482336 CSCC-41-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4648 catatTCCCACAatg UGUGGGAC m7a Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-4654 catatTCCCACAatg UGUGGGAU m7a Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-4769-5p catatTCCCACaatg GGUGGGAU m6b Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-580-3p catATTCTCAcaatg UUGAGAAU m7b Created HPSEF_1139_G1347.1_207648428
hsa-miR-6778-5p catatTCCCACaatg AGUGGGAG m6b Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-4322 catattCCCACAatg CUGUGGGC m6b Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-1233-5p catatTCCCACaatg AGUGGGAG m6b Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-4265 catattCCCACAatg CUGUGGGC m6b Disrupted HPSEF_1139_G1347.1_207648428
hsa-miR-4296 catattCCCACAatg AUGUGGGC m6b Disrupted HPSEF_1139_G1347.1_207648428

Mutation Mutation ID Sample Name Cancer Type
chr1:g.207475079A>C COSM256692 TCGA-AG-3892-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser