SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005739
Gene Symbol: VPS54

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.63892694C>T COSN9383244 AOCS-146-1-9 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4762-3p tactttTCAGAAatg CUUCUGAU m6b Disrupted HPCB1_23112_G29233.1_64119843
hsa-miR-576-5p tactttTTAGAAatg AUUCUAAU m6b Created HPCB1_23112_G29233.1_64119843
hsa-miR-4799-5p tacttTTTAGAaatg AUCUAAAU m6b Created HPCB1_23112_G29233.1_64119843
hsa-miR-4766-5p tactTTTCAGAaatg UCUGAAAG m7a Disrupted HPCB1_23112_G29233.1_64119843
hsa-miR-4263 tactttTTAGAAatg AUUCUAAG m6b Created HPCB1_23112_G29233.1_64119843

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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