SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003681
Gene Symbol: HMGXB4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr22:g.35293049C>T COSM4471009 CSCC-41-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-506-3p ctGTGCCTTtggccc UAAGGCAC m7b (m6b->m7b) HPTK1_19585_G23322.1_35689037
hsa-miR-548an ctgTGCCTTTggccc AAAAGGCA m7b Created HPTK1_19585_G23322.1_35689037
hsa-miR-3926 ctgtgccTTTGGCCc UGGCCAAA m7b Created HPTK1_19585_G23322.1_35689037
hsa-miR-5582-5p cTGTGCCTttggccc UAGGCACA m7b Created HPTK1_19585_G23322.1_35689037
hsa-miR-124-3p ctGTGCCTTtggccc UAAGGCAC m7b (m6b->m7b) HPTK1_19585_G23322.1_35689037

Mutation Mutation ID Sample Name Cancer Type
chr22:g.35293045T>C COSM186053 TCGA-AA-3947-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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