SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003675
Gene Symbol: LDLRAD4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.13645453A>T COSM1522623 TCGA-69-7979-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4327 tcagTGCAAGCacct GGCUUGCA m7b Disrupted HPSEF_10566_G12643.1_13645444
hsa-miR-621 tcagTGCTAGCacct GGCUAGCA m7b Created HPSEF_10566_G12643.1_13645444
hsa-miR-636 tcagtgCAAGCACct UGUGCUUG m7b Disrupted HPSEF_10566_G12643.1_13645444
hsa-miR-4327 tcagTGCAAGCacct GGCUUGCA m7b Disrupted HPSEF_10566_G12643.1_13645444
hsa-miR-621 tcagTGCTAGCacct GGCUAGCA m7b Created HPSEF_10566_G12643.1_13645444
hsa-miR-636 tcagtgCAAGCACct UGUGCUUG m7b Disrupted HPSEF_10566_G12643.1_13645444
Mutation Mutation ID Sample Name Cancer Type
chr18:g.13645229G>A COSM1589344 TCGA-EI-6917-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr18:g.13645228C>T COSM1153205 TCGA-A5-A0GA-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-216a-5p tgcagcaTGAGATTg UAAUCUCA m7b Created HPSEF_10565_G12642.1_13645220
hsa-miR-4728-3p tgCAGCATGagattg CAUGCUGA m7a (m6a->m7a) HPSEF_10565_G12642.1_13645220
hsa-miR-216a-5p tgcagcaTGAGATTg UAAUCUCA m7b Created HPSEF_10565_G12642.1_13645220
hsa-miR-4728-3p tgCAGCATGagattg CAUGCUGA m7a (m6a->m7a) HPSEF_10565_G12642.1_13645220

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser