SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401269A>G COSM1741265 064 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-3p taataCCACTGGact CCAGUGGG m7a Disrupted HPSLC_8712_G10294.1_42478649
hsa-miR-199a-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPSLC_8712_G10294.1_42478649
hsa-miR-199b-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPSLC_8712_G10294.1_42478649
hsa-miR-4738-5p taatacCGCTGGact ACCAGCGC m6b Created HPSLC_8712_G10294.1_42478649

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401143C>T COSM4066932 TCGA-HU-8243-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4444 tgtcaAACTCGAatc CUCGAGUU m7b Disrupted HPSLC_8711_G10293.1_42478505

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401141C>A COSM706152 TCGA-85-6561-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4444 tcaAACTCGAatcaa CUCGAGUU m7b Disrupted HPSLC_8711_G10293.1_42478505

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401140G>A COSM3191213 TCGA-Q1-A73O-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4444 caAACTCGAatcaat CUCGAGUU m7b (m7b->m6b) HPSLC_8711_G10293.1_42478505
hsa-miR-8081 caaACTCAAatcaat CUUGAGUC m6b Created HPSLC_8711_G10293.1_42478505

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401131G>A COSM979977 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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