SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401298C>T COSM4508520 CSCC-47-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4512 ggAGGCCCTttcact CAGGGCCU m7b (m7b->m6b) HPSEF_10166_G12201.1_42478658
hsa-miR-488-3p ggaggcCCTTTCAct UUGAAAGG m7b Disrupted HPSEF_10166_G12201.1_42478658
hsa-miR-5681a ggaggCCCTTTCact AGAAAGGG m7b Disrupted HPSEF_10166_G12201.1_42478658
hsa-miR-6730-5p ggaggcCCTTTCact AGAAAGGU m6b Disrupted HPSEF_10166_G12201.1_42478658
hsa-miR-6768-3p ggaGGCCTTTtcact CAAAGGCC m7b Created HPSEF_10166_G12201.1_42478658

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398664C>A COSM979964 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cccCCATCTCttggc GGAGAUGG m7b Disrupted HPSEF_10164_G12199.1_42476027

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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