SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401298C>T COSM4508520 CSCC-47-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4512 ggAGGCCCTttcact CAGGGCCU m7b (m7b->m6b) HPCB1_17877_G22455.1_42478658
hsa-miR-488-3p ggaggcCCTTTCAct UUGAAAGG m7b Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-5681a ggaggCCCTTTCact AGAAAGGG m7b Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-6730-5p ggaggcCCTTTCact AGAAAGGU m6b Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-6768-3p ggaGGCCTTTtcact CAAAGGCC m7b Created HPCB1_17877_G22455.1_42478658

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401269A>G COSM1741265 064 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-3p taataCCACTGGact CCAGUGGG m7a Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-199a-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-199b-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPCB1_17877_G22455.1_42478658
hsa-miR-4738-5p taatacCGCTGGact ACCAGCGC m6b Created HPCB1_17877_G22455.1_42478658

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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