SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002030
Gene Symbol: ECHDC1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127290127AT>T COSM1440279 TCGA-AA-3492-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-5p tcaAAAAATGctctaa UCAUUUUU m7b Disrupted HPSEF_20425_G24649.1_127611278

Mutation Mutation ID Sample Name Cancer Type
chr6:g.127290124T>C COSM3366285 TCGA-AK-3445-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7843-5p aaaaTGCCCTaaaca GAGGGCAG m6b Created HPSEF_20425_G24649.1_127611278
hsa-miR-6879-5p aaaaTGCCCTaaaca CAGGGCAG m6b Created HPSEF_20425_G24649.1_127611278
hsa-miR-6735-5p aaaaTGCCCTaaaca CAGGGCAG m6b Created HPSEF_20425_G24649.1_127611278
hsa-miR-4761-3p aaaATGCCCTaaaca GAGGGCAU m7b Created HPSEF_20425_G24649.1_127611278
hsa-miR-4632-5p aaaaTGCCCTaaaca GAGGGCAG m6b Created HPSEF_20425_G24649.1_127611278
hsa-miR-4436b-3p aaaaTGCCCTaaaca CAGGGCAG m6b Created HPSEF_20425_G24649.1_127611278
hsa-miR-4253 aaaATGCCCTaaaca AGGGCAUG m7a Created HPSEF_20425_G24649.1_127611278
hsa-miR-3945 aaaATGCCCTaaaca AGGGCAUA m7a Created HPSEF_20425_G24649.1_127611278
hsa-miR-2909 aaaatGCCCTAAaca GUUAGGGC m7b Created HPSEF_20425_G24649.1_127611278
hsa-miR-2278 aaaaTGCTCTaaaca GAGAGCAG m6b Disrupted HPSEF_20425_G24649.1_127611278
hsa-miR-1296-5p aaaatGCCCTAAaca UUAGGGCC m7a Created HPSEF_20425_G24649.1_127611278

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser