SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001664
Gene Symbol: SPOPL

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569031C>T COSM3743869 RK070_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-2-3p gcatCTGTACAGtgt CUGUACAG m8a Created HHFCT_90230_cluster-13179_11_12
hsa-let-7g-3p gcatCTGTACAGtgt CUGUACAG m8a Created HHFCT_90230_cluster-13179_11_12
hsa-miR-143-5p gcatCTGCACagtgt GGUGCAGU m6b Disrupted HHFCT_90230_cluster-13179_11_12
hsa-miR-5683 gCATCTGTAcagtgt UACAGAUG m8a (m7a->m8a) HHFCT_90230_cluster-13179_11_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569023A>T COSM3567083 TCGA-EE-A29M-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3146 gagcaCTAGCATctg CAUGCUAG m7b Disrupted HHFCT_90230_cluster-13179_11_12
hsa-miR-372-3p gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-373-3p gAGCACTTgcatctg GAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-4473 gAGCACTAGcatctg CUAGUGCU m8a (m8a->m7a) HHFCT_90230_cluster-13179_11_12
hsa-miR-449c-3p gagcACTAGCAtctg UUGCUAGU m7b Disrupted HHFCT_90230_cluster-13179_11_12
hsa-miR-520a-3p gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-520b gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-520c-3p gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-520d-3p gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-520e gAGCACTTgcatctg AAAGUGCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-6080 gaGCACTAGcatctg UCUAGUGC m7b (m7b->m6b) HHFCT_90230_cluster-13179_11_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569015C>T COSM4821040 TCGA-C5-A1MH-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-371b-5p agccTTTTGAGcact ACUCAAAA m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-373-5p agccTTTTGAGcact ACUCAAAA m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-616-5p agccTTTTGAGcact ACUCAAAA m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-7158-5p agccttTTGAGCact GGCUCAAU m6b Created HHFCT_90230_cluster-13179_11_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569004C>A COSM1527831 TCGA-50-5930-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-2-5p ttagtagAAGAAGCc AGCUUCUU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-4659a-3p ttagtAGAAGAAgcc UUUCUUCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-4659b-3p ttagtAGAAGAAgcc UUUCUUCU m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-4778-3p ttagtaGAAGAAGcc UCUUCUUC m7b Created HHFCT_90230_cluster-13179_11_12
hsa-miR-5089-3p ttAGTAGCAgaagcc AUGCUACU m7b (m7b->m6b) HHFCT_90230_cluster-13179_11_12
hsa-miR-6828-3p ttagtAGCAGAagcc AUCUGCUC m6b Disrupted HHFCT_90230_cluster-13179_11_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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