SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001485
Gene Symbol: ATP2C1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016312C>G COSM243083 P03-1906 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-767-5p gATGGTGCtaagatg UGCACCAU m7b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-200a-5p gatggtgGTAAGATg CAUCUUAC m7b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-200b-5p gatggtgGTAAGATg CAUCUUAC m7b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-29a-3p gaTGGTGCTAagatg UAGCACCA m8a Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-29b-3p gaTGGTGCTAagatg UAGCACCA m8a Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-29c-3p gaTGGTGCTAagatg UAGCACCA m8a Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-374b-3p gatggTGCTAAGatg CUUAGCAG m7a Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-5682 gatGGTGCTAagatg GUAGCACC m7b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-585-5p gatgGTGCTAagatg CUAGCACA m6b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-6871-3p gatGGTGCTaagatg CAGCACCC m6b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016309A>C COSM1660649 ccRCC-11 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5682 GGTGCTACgatgttg GUAGCACC m8a Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-374b-3p ggTGCTAAGatgttg CUUAGCAG m7a (m7a->m6a) HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016307A>T COSM1419033 TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-374c-3p tGCTAAGTtgttgta CACUUAGC m7b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-3529-3p tgctaagTTGTTGTa AACAACAA m7b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016300A>G COSM1642091 pfg008T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3130-3p atgttgtGTGCAGag GCUGCACC m6b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-20a-3p atgttgtATGCAGag ACUGCAUU m6b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-5003-5p aTGTTGTGtgcagag UCACAACA m7b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-5689 atgtTGTATGCagag AGCAUACA m7b Disrupted HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359
hsa-miR-8064 atgttGTGTGCagag AGCACACU m6b Created HHKTB_3869_NM_014065|1955|1994|30.8716155178558|0.352184826821359

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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