SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001485
Gene Symbol: ATP2C1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016341T>A COSM1495370 TCGA-A3-3363-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-331-5p cctTACCTAaataaa CUAGGUAU m6b Disrupted HHFCT_111978_cluster-16155_45_8
hsa-miR-6509-5p cctTACCTAAataaa AUUAGGUA m7b Disrupted HHFCT_111978_cluster-16155_45_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016166C>G COSM4843468 TCGA-EA-A3HT-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1302 cactccTGTCCCAga UUGGGACA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-30b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-1-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-2-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3192-5p cactcctCTCCCAGa UCUGGGAG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689a-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689c cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4298 cactccTGTCCCAGa CUGGGACA m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-4433a-3p cACTCCTGTcccaga ACAGGAGU m8a (m7a->m8a) HHFCT_106450_cluster-16760_1_8
hsa-miR-4433b-3p CACTCCTGtcccaga CAGGAGUG m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-6731-5p cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6779-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6788-5p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6878-5p cactccTCTCCCaga AGGGAGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-8085 cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1273h-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1302 cactccTGTCCCAga UUGGGACA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-30b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-1-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-2-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3192-5p cactcctCTCCCAGa UCUGGGAG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689a-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689c cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4298 cactccTGTCCCAGa CUGGGACA m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-4433a-3p cACTCCTGTcccaga ACAGGAGU m8a (m7a->m8a) HHFCT_106450_cluster-16760_1_8
hsa-miR-4433b-3p CACTCCTGtcccaga CAGGAGUG m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-6731-5p cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6779-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6788-5p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6878-5p cactccTCTCCCaga AGGGAGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-8085 cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1273h-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1302 cactccTGTCCCAga UUGGGACA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-30b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-1-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-2-3p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3192-5p cactcctCTCCCAGa UCUGGGAG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689a-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689b-3p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689c cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4298 cactccTGTCCCAGa CUGGGACA m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-4433a-3p cACTCCTGTcccaga ACAGGAGU m8a (m7a->m8a) HHFCT_106450_cluster-16760_1_8
hsa-miR-4433b-3p CACTCCTGtcccaga CAGGAGUG m8a Created HHFCT_106450_cluster-16760_1_8
hsa-miR-6731-5p cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6779-5p cactcctCTCCCAGa CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6788-5p cactccTCTCCCAGa CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6878-5p cactccTCTCCCaga AGGGAGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-8085 cactcCTCTCCCAga UGGGAGAG m8a Disrupted HHFCT_106450_cluster-16760_1_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131016160G>T COSM293718 TCGA-AA-3811-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-149-5p tctcccaGAGCCAGa UCUGGCUC m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3192-5p tCTCCCAGAgccaga UCUGGGAG m8a (m8a->m7a) HHFCT_106450_cluster-16760_1_8
hsa-miR-326 tctCCCAGAGccaga CCUCUGGG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-330-5p tctCCCAGAGccaga UCUCUGGG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689a-3p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689b-3p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689c tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4314 tcTCCCAGAGccaga CUCUGGGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4646-5p tcTCCCAGagccaga ACUGGGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4794 tctcccaTAGCCAGa UCUGGCUA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-619-5p tcTCCCAGagccaga GCUGGGAU m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6506-5p tcTCCCAGagccaga ACUGGGAU m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-664a-5p tctcccaTAGCCAGa ACUGGCUA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-6779-5p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6788-5p TCTCCCAGagccaga CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6822-3p tctcccAGAGCCaga AGGCUCUA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6871-5p tCTCCCATagccaga CAUGGGAG m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-760 tctccCAGAGCCaga CGGCUCUG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-8057 tctcccAGAGCCAga GUGGCUCU m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-1273h-5p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-149-5p tctcccaGAGCCAGa UCUGGCUC m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-204-3p tcTCCCAGagccaga GCUGGGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30b-3p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-1-3p TCTCCCAGagccaga CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-30c-2-3p TCTCCCAGagccaga CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3192-5p tCTCCCAGAgccaga UCUGGGAG m8a (m8a->m7a) HHFCT_106450_cluster-16760_1_8
hsa-miR-326 tctCCCAGAGccaga CCUCUGGG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-330-5p tctCCCAGAGccaga UCUCUGGG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689a-3p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689b-3p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-3689c tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4314 tcTCCCAGAGccaga CUCUGGGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4646-5p tcTCCCAGagccaga ACUGGGAA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-4794 tctcccaTAGCCAGa UCUGGCUA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-619-5p tcTCCCAGagccaga GCUGGGAU m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6506-5p tcTCCCAGagccaga ACUGGGAU m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-664a-5p tctcccaTAGCCAGa ACUGGCUA m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-6779-5p tCTCCCAGagccaga CUGGGAGG m7a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6788-5p TCTCCCAGagccaga CUGGGAGA m8a Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6822-3p tctcccAGAGCCaga AGGCUCUA m6b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-6871-5p tCTCCCATagccaga CAUGGGAG m7b Created HHFCT_106450_cluster-16760_1_8
hsa-miR-760 tctccCAGAGCCaga CGGCUCUG m7b Disrupted HHFCT_106450_cluster-16760_1_8
hsa-miR-8057 tctcccAGAGCCAga GUGGCUCU m7b Disrupted HHFCT_106450_cluster-16760_1_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130998356T>TT COSM4777888 55 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p tgTTTTTTGacatgt ACAAAAAA m7b (m7b->m6b) HHFCT_111965_cluster-16155_32_8
hsa-miR-3613-3p tgTTTTTTGacatgt ACAAAAAA m7b (m7b->m6b) HHFCT_111965_cluster-16155_32_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130997658T>C COSM479427 TCGA-B2-4099-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-5p tcgcAACTGGAaaga GUCCAGUU m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-3180-5p tcgcaaCTGGAAaga CUUCCAGA m6b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-4664-3p tcgcaACCGGAAaga CUUCCGGU m7b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-5195-3p tcgcAACTGGAaaga AUCCAGUU m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-671-3p tcgcAACCGGAaaga UCCGGUUC m7a Created HHFCT_111963_cluster-16155_30_12
hsa-miR-145-5p tcgcAACTGGAaaga GUCCAGUU m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-3180-5p tcgcaaCTGGAAaga CUUCCAGA m6b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-4664-3p tcgcaACCGGAAaga CUUCCGGU m7b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-5195-3p tcgcAACTGGAaaga AUCCAGUU m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-671-3p tcgcAACCGGAaaga UCCGGUUC m7a Created HHFCT_111963_cluster-16155_30_12

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130997653G>A COSM4113556 TCGA-BR-4184-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1224-5p ccTCCTCACaactgg GUGAGGAC m7a (m6a->m7a) HHFCT_111963_cluster-16155_30_12
hsa-miR-1294 cctCCTCACAactgg UGUGAGGU m7a Created HHFCT_111963_cluster-16155_30_12
hsa-miR-151a-5p cCTCCTCGcaactgg UCGAGGAG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-151b cCTCCTCGcaactgg UCGAGGAG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-381-5p cctCCTCGCaactgg AGCGAGGU m6b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-4316 cctCCTCACaactgg GGUGAGGC m6b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-4689 cCTCCTCAcaactgg UUGAGGAG m7b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-4737 cctCCTCGCAactgg AUGCGAGG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-611 ccTCCTCGCaactgg GCGAGGAC m7a (m7a->m6a) HHFCT_111963_cluster-16155_30_12
hsa-miR-6858-5p cCTCCTCACaactgg GUGAGGAG m8a (m7a->m8a) HHFCT_111963_cluster-16155_30_12
hsa-miR-1224-5p ccTCCTCACaactgg GUGAGGAC m7a (m6a->m7a) HHFCT_111963_cluster-16155_30_12
hsa-miR-1294 cctCCTCACAactgg UGUGAGGU m7a Created HHFCT_111963_cluster-16155_30_12
hsa-miR-151a-5p cCTCCTCGcaactgg UCGAGGAG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-151b cCTCCTCGcaactgg UCGAGGAG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-381-5p cctCCTCGCaactgg AGCGAGGU m6b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-4316 cctCCTCACaactgg GGUGAGGC m6b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-4689 cCTCCTCAcaactgg UUGAGGAG m7b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-4737 cctCCTCGCAactgg AUGCGAGG m7b Disrupted HHFCT_111963_cluster-16155_30_12
hsa-miR-611 ccTCCTCGCaactgg GCGAGGAC m7a (m7a->m6a) HHFCT_111963_cluster-16155_30_12
hsa-miR-6858-5p cCTCCTCACaactgg GUGAGGAG m8a (m7a->m8a) HHFCT_111963_cluster-16155_30_12

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130997640C>T COSM1419029 TCGA-AU-6004-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-520d-5p tgtcaTTTGTAaacc CUACAAAG m6b Created HHFCT_111963_cluster-16155_30_12
hsa-miR-524-5p tgtcaTTTGTAaacc CUACAAAG m6b Created HHFCT_111963_cluster-16155_30_12

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130956129G>T COSM367341 LUAD-F00282 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5581-3p cagaagaGCATGGAc UUCCAUGC m7b Disrupted HHFCT_111948_cluster-16155_14_10
hsa-miR-6872-3p cagaagaGCATGGac CCCAUGCC m6b Disrupted HHFCT_111948_cluster-16155_14_10

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130956115C>T COSM728444 TCGA-18-3409-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1914-3p caaaaACCCCTCtgc GGAGGGGU m7b Disrupted HHFCT_111948_cluster-16155_14_10
hsa-miR-193b-5p caaAAACCCCtctgc CGGGGUUU m7b Disrupted HHFCT_111948_cluster-16155_14_10
hsa-miR-5194 caaaaACCCCTCtgc UGAGGGGU m7b Disrupted HHFCT_111948_cluster-16155_14_10
hsa-miR-6738-5p caaaaACCCCTCtgc CGAGGGGU m7b Disrupted HHFCT_111948_cluster-16155_14_10
hsa-miR-6847-5p caaaaacTCCTCTGc ACAGAGGA m7b Created HHFCT_111948_cluster-16155_14_10

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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