SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001346
Gene Symbol: CLDN20
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.155275839G>A COSM4835444 TCGA-Q1-A73O-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4528 ctgtTATAATGttgg UCAUUAUA m7b Created HHFCT_135888_cluster-20208_10_8

Mutation Mutation ID Sample Name Cancer Type
chr6:g.155272868A>T COSN9498450 AOCS-057-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3136-5p attTCAGTCAtgaag CUGACUGA m7b Created HHFCT_135887_cluster-20208_9_8
hsa-miR-433-3p atttcagTCATGAag AUCAUGAU m6b Created HHFCT_135887_cluster-20208_9_8
hsa-miR-4439 attTCAGTCAtgaag GUGACUGA m7b Created HHFCT_135887_cluster-20208_9_8
hsa-miR-4513 attTCAGTCatgaag AGACUGAC m6b Created HHFCT_135887_cluster-20208_9_8
hsa-miR-6516-3p atttcagACATGAag AUCAUGUA m6b Disrupted HHFCT_135887_cluster-20208_9_8
hsa-miR-654-3p atttCAGACATgaag UAUGUCUG m7b Disrupted HHFCT_135887_cluster-20208_9_8
hsa-miR-6855-3p attTCAGTCatgaag AGACUGAC m6b Created HHFCT_135887_cluster-20208_9_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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