SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001330
Gene Symbol: REEP3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.63598111AT>A COSM1561268 TCGA-F5-6812-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-541-5p atagaaAATCCTTca AAAGGAUU m7b Created HPSEF_2692_G3228.1_65357866
hsa-miR-1290 atagAAAATCCttca UGGAUUUU m7b Created HPSEF_2692_G3228.1_65357866

Mutation Mutation ID Sample Name Cancer Type
chr10:g.63598107G>A COSM4573707 10-P4110 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7159-3p atatATAGAAAattc UUUCUAUG m7a Disrupted HPSEF_2692_G3228.1_65357866
hsa-miR-6083 atATATAAaaaattc CUUAUAUC m6b Created HPSEF_2692_G3228.1_65357866
hsa-miR-4482-3p atatATAGAAAattc UUUCUAUU m7a Disrupted HPSEF_2692_G3228.1_65357866
hsa-miR-190a-3p ATATATAGaaaattc CUAUAUAU m8a Disrupted HPSEF_2692_G3228.1_65357866

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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