SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001330
Gene Symbol: REEP3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.63624052A>C COSN5880842 RK200_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5011-5p aagaaATATATAatg UAUAUAUA m7a Disrupted HHFCT_21098_cluster-2466_51_39
hsa-miR-190a-3p aagaaATATATAatg CUAUAUAU m7b Disrupted HHFCT_21098_cluster-2466_51_39

Mutation Mutation ID Sample Name Cancer Type
chr10:g.63621749A>G COSN1497318 RK041_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-582-3p aacACCAGTTAcatt UAACUGGU m8a Created HHFCT_21068_cluster-2466_18_44
hsa-miR-411-3p aacaccaGTTACATt UAUGUAAC m7b Created HHFCT_21068_cluster-2466_18_44
hsa-miR-380-3p aacaccaATTACATt UAUGUAAU m7b Disrupted HHFCT_21068_cluster-2466_18_44
hsa-miR-379-3p aacaccaGTTACATt UAUGUAAC m7b Created HHFCT_21068_cluster-2466_18_44

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser