SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000935
Gene Symbol: PLOD2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160981GA>A COSM1419741 TCGA-G4-6588-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-324-5p atgggGGGATGCacgg CGCAUCCC m7b Disrupted HHFCT_106866_cluster-16801_50_35
hsa-miR-361-3p aTGGGGGAtgcacgg UCCCCCAG m7a Created HHFCT_106866_cluster-16801_50_35
hsa-miR-4536-3p atgggggATGCACGg UCGUGCAU m7b Created HHFCT_106866_cluster-16801_50_35
hsa-miR-6729-3p atggGGGGATGcacgg UCAUCCCC m7b Disrupted HHFCT_106866_cluster-16801_50_35

Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160956C>G COSM4621468 COLO320-DM [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p gcTGCTGCTcctggc UAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-15b-5p gcTGCTGCTcctggc UAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-16-5p gcTGCTGCTcctggc UAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-195-5p gcTGCTGCTcctggc UAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-424-5p gcTGCTGCTcctggc CAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-4530 gCTGCTGGtcctggc CCCAGCAG m7b Created HHFCT_106866_cluster-16801_50_35
hsa-miR-497-5p gcTGCTGCTcctggc CAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35
hsa-miR-6081 gctgCTGCTCCTggc AGGAGCAG m8a Disrupted HHFCT_106866_cluster-16801_50_35
hsa-miR-634 gcTGCTGGTcctggc AACCAGCA m7b (m6b->m7b) HHFCT_106866_cluster-16801_50_35
hsa-miR-665 gctgctgCTCCTGGc ACCAGGAG m7b Disrupted HHFCT_106866_cluster-16801_50_35
hsa-miR-6838-5p gcTGCTGCTcctggc AAGCAGCA m7b (m7b->m6b) HHFCT_106866_cluster-16801_50_35

Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160916G>A COSM4152982 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295b-5p tgTCTGGGTGcggac CACCCAGA m8a Disrupted HHFCT_106865_cluster-16801_48_23
hsa-miR-1912 tgTCTGGGTgcggac UACCCAGA m7b (m7b->m6b) HHFCT_106865_cluster-16801_48_23
hsa-miR-500b-3p tgtCTGGGTGCggac GCACCCAG m8a Disrupted HHFCT_106865_cluster-16801_48_23

Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160913C>T COSM1318712 TCGA-AB-2857-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-500b-3p CTGGGTGCggactcg GCACCCAG m8a Disrupted HHFCT_106865_cluster-16801_48_23

Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160894G>A COSM1039571 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273e agcccTCAAGCAtcc UUGCUUGA m7b Created HHFCT_106864_cluster-16801_47_16
hsa-miR-4721 AGCCCTCAagcatcc UGAGGGCU m8a Created HHFCT_106864_cluster-16801_47_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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