SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000895
Gene Symbol: LTA4H
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.96029074C>T COSM1706057 YUDEXA [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4311 aaTCTCTTTtcctat GAAAGAGA m7b (m6b->m7b) HHFCT_34075_cluster-5707_4_32
hsa-miR-4476 aatctctCTTCCTat CAGGAAGG m6b Disrupted HHFCT_34075_cluster-5707_4_32
hsa-miR-4496 aatctctTTTCCTat GAGGAAAC m6b Created HHFCT_34075_cluster-5707_4_32
hsa-miR-6077 aatctCTCTTCCtat GGGAAGAG m7b Disrupted HHFCT_34075_cluster-5707_4_32
hsa-miR-6124 aatctCTTTTCCtat GGGAAAAG m7b Created HHFCT_34075_cluster-5707_4_32
hsa-miR-6876-5p aatctctCTTCCTat CAGGAAGG m6b Disrupted HHFCT_34075_cluster-5707_4_32
hsa-miR-4311 aaTCTCTTTtcctat GAAAGAGA m7b (m6b->m7b) HHFCT_34075_cluster-5707_4_32
hsa-miR-4476 aatctctCTTCCTat CAGGAAGG m6b Disrupted HHFCT_34075_cluster-5707_4_32
hsa-miR-4496 aatctctTTTCCTat GAGGAAAC m6b Created HHFCT_34075_cluster-5707_4_32
hsa-miR-6077 aatctCTCTTCCtat GGGAAGAG m7b Disrupted HHFCT_34075_cluster-5707_4_32
hsa-miR-6124 aatctCTTTTCCtat GGGAAAAG m7b Created HHFCT_34075_cluster-5707_4_32
hsa-miR-6876-5p aatctctCTTCCTat CAGGAAGG m6b Disrupted HHFCT_34075_cluster-5707_4_32

Mutation Mutation ID Sample Name Cancer Type
chr12:g.96027510T>C COSM4857807 TCGA-B0-4823-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1249-5p cttctgCCCTCCagt AGGAGGGA m6b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-2278 cttCTGCTCTCcagt GAGAGCAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-298 CTTCTGCTctccagt AGCAGAAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-3616-3p cttcTGCCCTCcagt CGAGGGCA m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-4436b-3p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-4468 ctTCTGCTCTccagt AGAGCAGA m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-4632-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HHFCT_34074_cluster-5707_3_29
hsa-miR-5192 cttctgCTCTCCagt AGGAGAGU m6b Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-6515-5p cttctgCCCTCCAgt UUGGAGGG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6735-5p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6797-5p cttctgCCCTCCagt AGGAGGGA m6b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6879-5p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-7843-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HHFCT_34074_cluster-5707_3_29
hsa-miR-1249-5p cttctgCCCTCCagt AGGAGGGA m6b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-2278 cttCTGCTCTCcagt GAGAGCAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-298 CTTCTGCTctccagt AGCAGAAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-3616-3p cttcTGCCCTCcagt CGAGGGCA m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-4436b-3p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-4468 ctTCTGCTCTccagt AGAGCAGA m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-4632-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HHFCT_34074_cluster-5707_3_29
hsa-miR-5192 cttctgCTCTCCagt AGGAGAGU m6b Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-6515-5p cttctgCCCTCCAgt UUGGAGGG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6735-5p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6797-5p cttctgCCCTCCagt AGGAGGGA m6b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-6879-5p cttCTGCCCTccagt CAGGGCAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-7843-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HHFCT_34074_cluster-5707_3_29

Mutation Mutation ID Sample Name Cancer Type
chr12:g.96027507C>T COSM3872742 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-2-3p ctgctctTCAGTGGc ACCACUGA m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-2278 CTGCTCTCcagtggc GAGAGCAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-4709-3p ctgCTCTTCAgtggc UUGAAGAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-5192 ctgCTCTCCagtggc AGGAGAGU m6b Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-181a-2-3p ctgctctTCAGTGGc ACCACUGA m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-2278 CTGCTCTCcagtggc GAGAGCAG m8a Disrupted HHFCT_34074_cluster-5707_3_29
hsa-miR-4709-3p ctgCTCTTCAgtggc UUGAAGAG m7b Created HHFCT_34074_cluster-5707_3_29
hsa-miR-5192 ctgCTCTCCagtggc AGGAGAGU m6b Disrupted HHFCT_34074_cluster-5707_3_29

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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