SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000885
Gene Symbol: ITGA4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.181536497A>T COSN9119875 AOCS-146-1-9 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-590-3p gTAAAATTttgacta UAAUUUUA m7b Created HHFCT_91283_cluster-13267_8_8
hsa-miR-4282 gtaAAATTTTgacta UAAAAUUU m7b Created HHFCT_91283_cluster-13267_8_8
hsa-miR-195-3p gtaaAATATTGacta CCAAUAUU m7b Disrupted HHFCT_91283_cluster-13267_8_8
hsa-miR-16-2-3p gtaaAATATTGacta CCAAUAUU m7b Disrupted HHFCT_91283_cluster-13267_8_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181511750G>A COSM1013564 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3686 tTTACAGATttctgc AUCUGUAA m8a (m7a->m8a) HHFCT_91276_cluster-13267_1_7
hsa-miR-649 tttACAGGTTTctgc AAACCUGU m8a Disrupted HHFCT_91276_cluster-13267_1_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181511730A>AA COSM85627 Pa14C [pancreas][NS][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-335-3p cATGAAAAAttgttct UUUUUCAU m8a (m7a->m8a) HHFCT_91276_cluster-13267_1_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181511726G>A COSM3574759 TCGA-EE-A29L-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3115 tgCCCATAaaaattg AUAUGGGU m6b Created HHFCT_91276_cluster-13267_1_7
hsa-miR-335-3p tgcccATGAAAAttg UUUUUCAU m7b Disrupted HHFCT_91276_cluster-13267_1_7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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