SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000863
Gene Symbol: HTR1B
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.77463275C>T COSM4004128 SNUH_G26_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f aggactCCATCTCCc GGAGAUGG m8a Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-1289 aGGACTCCAtctccc UGGAGUCC m8a (m8a->m7a) HPTK1_26262_G31393.1_78173000
hsa-miR-3198 agGACTCCAtctccc GUGGAGUC m7b (m7b->m6b) HPTK1_26262_G31393.1_78173000
hsa-miR-4294 agGACTCCatctccc GGGAGUCU m6b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-4309 agGACTCCAtctccc CUGGAGUC m7b (m7b->m6b) HPTK1_26262_G31393.1_78173000
hsa-miR-4534 aggaCTCCATCtccc GGAUGGAG m7b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-6514-5p aggACTCCATctccc UAUGGAGU m7b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-8082 aggaCTCCATCtccc UGAUGGAG m7b Disrupted HPTK1_26262_G31393.1_78173000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.77463265C>A COSM1081817 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3162-5p CTCCCTAAcctggaa UUAGGGAG m8a Created HPTK1_26262_G31393.1_78173000
hsa-miR-4685-5p ctccctaCCCTGGaa CCCAGGGC m6b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-6755-5p ctccCTACCCTggaa UAGGGUAG m7b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-6837-5p ctccctaCCCTGGaa ACCAGGGC m6b Disrupted HPTK1_26262_G31393.1_78173000
hsa-miR-7113-5p ctccctaCCCTGGAa UCCAGGGA m7a Disrupted HPTK1_26262_G31393.1_78173000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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