SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000757
Gene Symbol: CSF1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923880C>G COSM1472396 TCGA-C8-A26V-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4468 accctcTCTGCTCag AGAGCAGA m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6758-5p acCCTCTCTgctcag UAGAGAGG m7b (m7b->m6b) HHFCT_11900_cluster-572_8_25
hsa-miR-6856-5p acCCTCTCTgctcag AAGAGAGG m7b (m7b->m6b) HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923866C>A COSM893593 TCGA-B5-A0JZ-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1914-3p tcagcaACCCCTCCa GGAGGGGU m8a Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-5194 tcagcaACCCCTCca UGAGGGGU m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6738-5p tcagcaACCCCTCca CGAGGGGU m7b Disrupted HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923857C>T COSM893592 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1291 ccCAGGGCCtcagca UGGCCCUG m7b (m7b->m6b) HHFCT_11900_cluster-572_8_25
hsa-miR-4329 cccaggGTCTCAGca CCUGAGAC m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-4649-3p cccaggGCCTCAGca UCUGAGGC m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4725-5p ccCAGGGTCTcagca AGACCCUG m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-5008-5p cccaGGGCCTCAgca UGAGGCCC m8a Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-504-5p ccCAGGGTCTcagca AGACCCUG m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-6089 cccagGGCCTCagca GGAGGCCG m6b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6775-3p ccCAGGGCCTcagca AGGCCCUG m8a Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-7160-5p cccagggCCTCAGCa UGCUGAGG m7b Disrupted HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923850C>T COSM136157 cSCCP6 [skin][scalp][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1237-5p ctgCGCCCCCagggc CGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-3197 ctGCGCCTCCagggc GGAGGCGC m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-3612 ctgcGCCTCCagggc AGGAGGCA m6b Created HHFCT_11900_cluster-572_8_25
hsa-miR-4254 ctgcgcCTCCAGGgc GCCUGGAG m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-4292 ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4308 ctgcgccTCCAGGGc UCCCUGGA m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-4443 ctgcGCCTCCAgggc UUGGAGGC m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-4488 ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4697-5p ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-637 ctgcgCCCCCAGggc ACUGGGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-650 ctgcGCCTCCagggc AGGAGGCA m6b Created HHFCT_11900_cluster-572_8_25
hsa-miR-6791-5p ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6852-5p ctgcgcCCCCAGGGc CCCUGGGG m8a Disrupted HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923850C>A COSM4217639 HT55 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1237-5p ctgCGCCCCCagggc CGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4292 ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4456 ctgcgCCACCAGGgc CCUGGUGG m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-4488 ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4697-5p ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-637 ctgcgCCCCCAGggc ACUGGGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6791-5p ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6852-5p ctgcgcCCCCAGGGc CCCUGGGG m8a Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-1237-5p ctgCGCCCCCagggc CGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4292 ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4456 ctgcgCCACCAGGgc CCUGGUGG m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-4488 ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-4697-5p ctgCGCCCCCagggc AGGGGGCG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-637 ctgcgCCCCCAGggc ACUGGGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6791-5p ctgcgccCCCAGGGc CCCCUGGG m7b Disrupted HHFCT_11900_cluster-572_8_25
hsa-miR-6852-5p ctgcgcCCCCAGGGc CCCUGGGG m8a Disrupted HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923844T>C COSM3747494 PDA_021 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3178 tcatcacCGCGCCCc GGGGCGCG m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-598-5p tcATCACCGCgcccc GCGGUGAU m8a Created HHFCT_11900_cluster-572_8_25
hsa-miR-3178 tcatcacCGCGCCCc GGGGCGCG m7b Created HHFCT_11900_cluster-572_8_25
hsa-miR-598-5p tcATCACCGCgcccc GCGGUGAU m8a Created HHFCT_11900_cluster-572_8_25

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923228G>T COSM3470999 TCGA-FW-A3TU-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6089 tgaccCGGCCTCtgt GGAGGCCG m7b Disrupted HHFCT_11899_cluster-572_7_12
hsa-miR-6847-5p tgacccgTCCTCTGt ACAGAGGA m7b Created HHFCT_11899_cluster-572_7_12
hsa-miR-6089 tgaccCGGCCTCtgt GGAGGCCG m7b Disrupted HHFCT_11899_cluster-572_7_12
hsa-miR-6847-5p tgacccgTCCTCTGt ACAGAGGA m7b Created HHFCT_11899_cluster-572_7_12

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923227G>A COSM3801216 TCGA-AO-A128-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4505 gtgaCCCAGCCTctg AGGCUGGG m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-485-5p gtgaccCAGCCTCTg AGAGGCUG m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-5589-5p gtgACCCAGCCtctg GGCUGGGU m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-5787 gtgaCCCAGCCtctg GGGCUGGG m7b Created HHFCT_11899_cluster-572_7_12
hsa-miR-6089 gtgaccCGGCCTCtg GGAGGCCG m7b Disrupted HHFCT_11899_cluster-572_7_12
hsa-miR-6884-5p gtgaccCAGCCTCTg AGAGGCUG m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-4505 gtgaCCCAGCCTctg AGGCUGGG m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-485-5p gtgaccCAGCCTCTg AGAGGCUG m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-5589-5p gtgACCCAGCCtctg GGCUGGGU m8a Created HHFCT_11899_cluster-572_7_12
hsa-miR-5787 gtgaCCCAGCCtctg GGGCUGGG m7b Created HHFCT_11899_cluster-572_7_12
hsa-miR-6089 gtgaccCGGCCTCtg GGAGGCCG m7b Disrupted HHFCT_11899_cluster-572_7_12
hsa-miR-6884-5p gtgaccCAGCCTCTg AGAGGCUG m8a Created HHFCT_11899_cluster-572_7_12

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923212C>T COSM3470996 TCGA-FS-A4F5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-613 aagcCATTCCTagca AGGAAUGU m7a Created HHFCT_11898_cluster-572_6_18
hsa-miR-6757-5p aagcCATCCCTAgca UAGGGAUG m8a Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-613 aagcCATTCCTagca AGGAAUGU m7a Created HHFCT_11898_cluster-572_6_18
hsa-miR-6757-5p aagcCATCCCTAgca UAGGGAUG m8a Disrupted HHFCT_11898_cluster-572_6_18

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923209C>T COSM4501411 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-135a-5p ccaAAGCCATcccta UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-135b-5p ccaAAGCCATcccta UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-208a-5p ccAAAGCTatcccta GAGCUUUU m6b Created HHFCT_11898_cluster-572_6_18
hsa-miR-208b-5p ccAAAGCTatcccta AAGCUUUU m6b Created HHFCT_11898_cluster-572_6_18
hsa-miR-6757-5p ccaaagcCATCCCTa UAGGGAUG m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-135a-5p ccaAAGCCATcccta UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-135b-5p ccaAAGCCATcccta UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-208a-5p ccAAAGCTatcccta GAGCUUUU m6b Created HHFCT_11898_cluster-572_6_18
hsa-miR-208b-5p ccAAAGCTatcccta AAGCUUUU m6b Created HHFCT_11898_cluster-572_6_18
hsa-miR-6757-5p ccaaagcCATCCCTa UAGGGAUG m7b Disrupted HHFCT_11898_cluster-572_6_18

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923207G>A COSM4553289 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1193 ccccaaaACCATCCc GGGAUGGU m7b Created HHFCT_11898_cluster-572_6_18
hsa-miR-135a-5p ccccaAAGCCATccc UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-135b-5p ccccaAAGCCATccc UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-8069 ccccaaAACCATCCc GGAUGGUU m8a Created HHFCT_11898_cluster-572_6_18
hsa-miR-1193 ccccaaaACCATCCc GGGAUGGU m7b Created HHFCT_11898_cluster-572_6_18
hsa-miR-135a-5p ccccaAAGCCATccc UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-135b-5p ccccaAAGCCATccc UAUGGCUU m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-8069 ccccaaAACCATCCc GGAUGGUU m8a Created HHFCT_11898_cluster-572_6_18

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109923185T>C COSM4971149 SJHGG060_A [central_nervous_system][brainstem][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-3p agcctgATTGCAact CUGCAAUG m6b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-4684-3p agcctgaTTGCAACt UGUUGCAA m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-6516-5p agcctgACTGCAAct UUUGCAGU m7b Created HHFCT_11898_cluster-572_6_18
hsa-miR-106a-3p agcctgATTGCAact CUGCAAUG m6b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-4684-3p agcctgaTTGCAACt UGUUGCAA m7b Disrupted HHFCT_11898_cluster-572_6_18
hsa-miR-6516-5p agcctgACTGCAAct UUUGCAGU m7b Created HHFCT_11898_cluster-572_6_18

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109915682G>C COSM3801213 TCGA-AO-A128-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7c-3p gtTTGTACAccagga CUGUACAA m7b (m6b->m7b) HHFCT_11897_cluster-572_5_9
hsa-miR-1283 gTTTGTAGAccagga UCUACAAA m8a (m8a->m7a) HHFCT_11897_cluster-572_5_9
hsa-miR-3177-5p gttTGTACACcagga UGUGUACA m7b Created HHFCT_11897_cluster-572_5_9
hsa-miR-3618 gttTGTAGACcagga UGUCUACA m7b Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-3663-5p gtttgtAGACCAGga GCUGGUCU m7b Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-4456 gtttgtaCACCAGGa CCUGGUGG m7a Created HHFCT_11897_cluster-572_5_9
hsa-miR-520d-5p gTTTGTAGaccagga CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-524-5p gTTTGTAGaccagga CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-7978 gtttgtACACCAGga UCUGGUGU m7b Created HHFCT_11897_cluster-572_5_9
hsa-let-7c-3p gtTTGTACAccagga CUGUACAA m7b (m6b->m7b) HHFCT_11897_cluster-572_5_9
hsa-miR-1283 gTTTGTAGAccagga UCUACAAA m8a (m8a->m7a) HHFCT_11897_cluster-572_5_9
hsa-miR-3177-5p gttTGTACACcagga UGUGUACA m7b Created HHFCT_11897_cluster-572_5_9
hsa-miR-3618 gttTGTAGACcagga UGUCUACA m7b Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-3663-5p gtttgtAGACCAGga GCUGGUCU m7b Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-4456 gtttgtaCACCAGGa CCUGGUGG m7a Created HHFCT_11897_cluster-572_5_9
hsa-miR-520d-5p gTTTGTAGaccagga CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-524-5p gTTTGTAGaccagga CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-7978 gtttgtACACCAGga UCUGGUGU m7b Created HHFCT_11897_cluster-572_5_9

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109915676T>C COSM1332519 TCGA-A6-5665-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1283 atttgagTTTGTAGa UCUACAAA m7b Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-520d-5p atttgagTTTGTAGa CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9
hsa-miR-524-5p atttgagTTTGTAGa CUACAAAG m7a Disrupted HHFCT_11897_cluster-572_5_9

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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