SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

Transcript ID:	NM_000745
Gene Symbol:	CHRNA5
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Somatic mutations that impact miRNA target sites

Mutation		Mutation ID	Sample Name	Cancer Type
chr15:g.78590181C>T		COSM965391	TCGA-AP-A059-01	[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-589-5p	tattgGGTTCTCAtt	UGAGAACC	m8a	Created	HHFCT_53986_uc002bdy.1_8_7
hsa-miR-4712-3p	tattgggCTCTCATt	AAUGAGAG	m7b	Disrupted	HHFCT_53986_uc002bdy.1_8_7

Mutation		Mutation ID	Sample Name	Cancer Type
chr15:g.78590170C>T		COSM3504320	TCGA-EE-A3AE-06	[skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-4797-5p	ataatACTCTGTatt	GACAGAGU	m7b	Created	HHFCT_53986_uc002bdy.1_8_7
hsa-miR-496	atAATACTCtgtatt	UGAGUAUU	m7b	(m6b->m7b)	HHFCT_53986_uc002bdy.1_8_7
hsa-miR-503-3p	atAATACCCtgtatt	GGGGUAUU	m7b	(m7b->m6b)	HHFCT_53986_uc002bdy.1_8_7

Mutation		Mutation ID	Sample Name	Cancer Type
chr15:g.78589978C>T		COSM1708432	YURUS	[skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-640	gaTGGATCAcaggtt	AUGAUCCA	m7b	(m7b->m6b)	HHFCT_53985_uc002bdy.1_7_7
hsa-miR-4679	gatggATCACAGgtt	UCUGUGAU	m7b	Disrupted	HHFCT_53985_uc002bdy.1_7_7

Mutation		Mutation ID	Sample Name	Cancer Type
chr15:g.78580879G>A		COSM3504312	T1764	[large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-3674	agaCTACAAaagatg	AUUGUAGA	m6b	Created	HHFCT_53982_uc002bdy.1_4_9

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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