SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000629
Gene Symbol: IFNAR1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.33355461C>T COSM281859 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4738-3p taCAGTTTCcaaact UGAAACUG m7b (m6b->m7b) HHFCT_98528_uc002yrn.1_9_18
hsa-miR-450a-1-3p tacagTTCCCAAact AUUGGGAA m7b Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-4471 tacAGTTCCCAaact UGGGAACU m8a Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-887-5p tacagtTCCCAAact CUUGGGAG m6b Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-4261 tacaGTTTCCaaact AGGAAACA m6b Created HHFCT_98528_uc002yrn.1_9_18
hsa-miR-3978 tacagTTTCCAaact GUGGAAAG m6b Created HHFCT_98528_uc002yrn.1_9_18
hsa-miR-3122 tacagtTCCCAAact GUUGGGAC m6b Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-1292-5p tacaGTTCCCAaact UGGGAACG m7a Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-8059 tacAGTTCCCaaact GGGGAACU m7b Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-6740-5p tacagttCCCAAACt AGUUUGGG m7b Disrupted HHFCT_98528_uc002yrn.1_9_18
hsa-miR-548g-3p tACAGTTTccaaact AAAACUGU m7b Created HHFCT_98528_uc002yrn.1_9_18
Mutation Mutation ID Sample Name Cancer Type
chr21:g.33352885C>T COSM1285478 TARGET-30-PASGUT [autonomic_ganglia][NS][neuroblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr21:g.33352884G>T COSM3693728 TCGA-CK-5916-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4797-5p tagtgACTCTGTatg GACAGAGU m7b Created HHFCT_98527_uc002yrn.1_8_23

Mutation Mutation ID Sample Name Cancer Type
chr21:g.33352883C>T COSM4101296 TCGA-BR-8680-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3120-3p ttagtgaTGCTGTat CACAGCAA m6b Created HHFCT_98527_uc002yrn.1_8_23
hsa-miR-34c-3p tTAGTGATgctgtat AAUCACUA m7b Created HHFCT_98527_uc002yrn.1_8_23
hsa-miR-7112-3p ttaGTGATGCtgtat UGCAUCAC m7b Created HHFCT_98527_uc002yrn.1_8_23

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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