SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000544
Gene Symbol: TAP2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.32837635T>C COSM185783 TCGA-AA-A00R-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6742-5p taatcCCCCACTatt AGUGGGGU m7a Created HPCB3_20328_G27956.1_32805412
hsa-miR-625-5p taaTCCCCCactatt AGGGGGAA m6b Created HPCB3_20328_G27956.1_32805412
hsa-miR-921 taatccCTCACTAtt CUAGUGAG m7b Disrupted HPCB3_20328_G27956.1_32805412
hsa-miR-6834-5p taaTCCCTCACtatt GUGAGGGA m8a Disrupted HPCB3_20328_G27956.1_32805412
hsa-miR-1296-3p taatcCCCCACTatt GAGUGGGG m7b Created HPCB3_20328_G27956.1_32805412
hsa-miR-1275 taaTCCCCCACtatt GUGGGGGA m8a Created HPCB3_20328_G27956.1_32805412
hsa-miR-5010-5p taATCCCCCactatt AGGGGGAU m7b (m6b->m7b) HPCB3_20328_G27956.1_32805412
hsa-miR-491-5p taatcCCCCACTatt AGUGGGGA m7a Created HPCB3_20328_G27956.1_32805412
hsa-miR-4727-3p taatccCCCACTATt AUAGUGGG m8a Created HPCB3_20328_G27956.1_32805412
hsa-miR-4665-5p taaTCCCCCActatt CUGGGGGA m7b Created HPCB3_20328_G27956.1_32805412
hsa-miR-4525 taATCCCCCactatt GGGGGGAU m7b (m6b->m7b) HPCB3_20328_G27956.1_32805412
hsa-miR-4472 taatCCCCCACtatt GGUGGGGG m7b Created HPCB3_20328_G27956.1_32805412
hsa-miR-4450 tAATCCCCcactatt UGGGGAUU m7b Created HPCB3_20328_G27956.1_32805412
hsa-miR-4447 taatCCCCCACtatt GGUGGGGG m7b Created HPCB3_20328_G27956.1_32805412

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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