SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_000538
Gene Symbol: RFXAP
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr13:g.36827702T>G COSM1493101 TCGA-CJ-4869-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29a-5p tattAAATCAGcaag ACUGAUUU m7b Disrupted HHFCT_42254_uc001uvu.1_2_20
hsa-miR-628-5p tattaaaTCAGCAag AUGCUGAC m6b Disrupted HHFCT_42254_uc001uvu.1_2_20
hsa-miR-8075 tattaaATCAGCAag UGCUGAUG m7a Disrupted HHFCT_42254_uc001uvu.1_2_20

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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