SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000454
Gene Symbol: SOD1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.31667341C>G COSM3799849 TCGA-DK-A3X1-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1976 tcactctCAGGAGac CCUCCUGC m6b Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-3653-5p tcactcTCAGGAGac CCUCCUGA m7b Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-378a-5p tcactcTCAGGAGac CUCCUGAC m7a Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-4251 tcacTCTCAGGagac CCUGAGAA m7a Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-4279 tcactctGAGGAGAc CUCUCCUC m7b Created HHFCT_98433_cluster-14885_3_398
hsa-miR-4324 tcacTCTCAGGagac CCCUGAGA m7b Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-4329 tcacTCTCAGGagac CCUGAGAC m7a Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-4330 tcacTCTGAGGagac CCUCAGAU m7a Created HHFCT_98433_cluster-14885_3_398
hsa-miR-4693-3p tCACTCTCAggagac UGAGAGUG m8a (m8a->m7a) HHFCT_98433_cluster-14885_3_398
hsa-miR-544b tcactCTCAGGagac ACCUGAGG m6b Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-5586-3p TCACTCTGaggagac CAGAGUGA m8a Created HHFCT_98433_cluster-14885_3_398
hsa-miR-6761-5p tcaCTCTCAGgagac UCUGAGAG m7b Disrupted HHFCT_98433_cluster-14885_3_398
hsa-miR-759 tCACTCTGaggagac GCAGAGUG m7b Created HHFCT_98433_cluster-14885_3_398
hsa-miR-1200 tcactCTCAGGAGac CUCCUGAG m8a Disrupted HHFCT_98433_cluster-14885_3_398

Mutation Mutation ID Sample Name Cancer Type
chr21:g.31667333C>G COSM444362 TCGA-A2-A04W-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1236-5p ctgtgatGTCACTCt UGAGUGAC m7b Created HHFCT_98433_cluster-14885_3_398
hsa-miR-3913-3p ctgTGATGTCactct AGACAUCA m7b Created HHFCT_98433_cluster-14885_3_398
hsa-miR-489-3p ctgtGATGTCACtct GUGACAUC m8a Created HHFCT_98433_cluster-14885_3_398
hsa-miR-499a-3p ctGTGATGTcactct AACAUCAC m7b (m6b->m7b) HHFCT_98433_cluster-14885_3_398
hsa-miR-499b-3p ctGTGATGTcactct AACAUCAC m7b (m6b->m7b) HHFCT_98433_cluster-14885_3_398

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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