SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000440
Gene Symbol: PDE6A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.149932346A>G COSN158416 TCGA-13-0920-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4263 gatTTAGAAagacct AUUCUAAG m6b Disrupted HHFCT_125685_uc003lrg.2_3_21
hsa-miR-5009-3p gATTTAGGAagacct UCCUAAAU m8a (m7a->m8a) HHFCT_125685_uc003lrg.2_3_21
hsa-miR-6830-3p gatttaGAAAGACct UGUCUUUC m7b Disrupted HHFCT_125685_uc003lrg.2_3_21
hsa-miR-576-5p gatTTAGAAagacct AUUCUAAU m6b Disrupted HHFCT_125685_uc003lrg.2_3_21
hsa-miR-4799-5p gATTTAGAaagacct AUCUAAAU m7b Disrupted HHFCT_125685_uc003lrg.2_3_21

Mutation Mutation ID Sample Name Cancer Type
chr5:g.149932309T>A COSN15131264 PD4199a [NS][NS][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-423-3p aaatCCGAGCagttg AGCUCGGU m6b Created HHFCT_125685_uc003lrg.2_3_21
hsa-miR-3917 aaaTCCGAGCagttg GCUCGGAC m7a Created HHFCT_125685_uc003lrg.2_3_21

Mutation Mutation ID Sample Name Cancer Type
chr5:g.149932299C>A COSN15131406 PD4199a [NS][NS][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4474-5p agttggcAGACTAAa UUAGUCUC m7a Created HHFCT_125685_uc003lrg.2_3_21
hsa-miR-346 agttGGCAGACtaaa UGUCUGCC m7b Created HHFCT_125685_uc003lrg.2_3_21
hsa-miR-192-3p agTTGGCAGactaaa CUGCCAAU m7a (m6a->m7a) HHFCT_125685_uc003lrg.2_3_21
hsa-miR-4727-5p agtTGGCAGActaaa AUCUGCCA m7b Created HHFCT_125685_uc003lrg.2_3_21

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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