SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000393
Gene Symbol: COL5A2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.189035099G>TG COSM1404013 T3498 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p cTTTTTTGcgccttt ACAAAAAA m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-524-3p cttttttGCGCCTTt GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-525-3p cttttttGCGCCTTt GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825

Mutation Mutation ID Sample Name Cancer Type
chr2:g.189035098C>T COSM718863 TCGA-BR-4371-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-124-3p ttttttGTGCCTTtt UAAGGCAC m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-3613-3p TTTTTTGTgcctttt ACAAAAAA m8a Created HPCB3_13606_G18531.1_189899825
hsa-miR-4484 ttttttgCGCCTTTt AAAAGGCG m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-506-3p ttttttGTGCCTTtt UAAGGCAC m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-524-3p ttttttGCGCCTTtt GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-525-3p ttttttGCGCCTTtt GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-548an ttttttgTGCCTTTt AAAAGGCA m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-5582-5p tttttTGTGCCTttt UAGGCACA m7b Created HPCB3_13606_G18531.1_189899825

Mutation Mutation ID Sample Name Cancer Type
chr2:g.189035097G>C COSM209214 TCGA-AA-3930-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4484 tttttgCGCCTTTTa AAAAGGCG m8a Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-4688 ttttTGCCCCTttta UAGGGGCA m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-524-3p tttttGCGCCTTtta GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-525-3p tttttGCGCCTTtta GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-548an tttttgcGCCTTTTa AAAAGGCA m7a Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-6743-5p ttttTGCCCCTTtta AAGGGGCA m8a Created HPCB3_13606_G18531.1_189899825

Mutation Mutation ID Sample Name Cancer Type
chr2:g.189035097G>A COSM1013963 313 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p tttttGCACCTTtta UAAGGUGC m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-18b-5p tttttGCACCTTtta UAAGGUGC m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-19a-3p ttTTTGCACctttta UGUGCAAA m7b (m6b->m7b) HPCB3_13606_G18531.1_189899825
hsa-miR-19b-3p ttTTTGCACctttta UGUGCAAA m7b (m6b->m7b) HPCB3_13606_G18531.1_189899825
hsa-miR-4484 tttttgCGCCTTTTa AAAAGGCG m8a Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-4735-3p tttttGCACCTTTta AAAGGUGC m8a Created HPCB3_13606_G18531.1_189899825
hsa-miR-524-3p tttttGCGCCTTtta GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-525-3p tttttGCGCCTTtta GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-548an tttttgcGCCTTTTa AAAAGGCA m7a Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-548aw tTTTTGCACctttta GUGCAAAA m8a (m7a->m8a) HPCB3_13606_G18531.1_189899825

Mutation Mutation ID Sample Name Cancer Type
chr2:g.189035095C>A COSM209213 TCGA-AA-3984-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3163 tttgcgcATTTTATc UAUAAAAU m7b Created HPCB3_13606_G18531.1_189899825
hsa-miR-3662 tttgcgCATTTTatc GAAAAUGA m6b Created HPCB3_13606_G18531.1_189899825
hsa-miR-4484 tttgCGCCTTTTatc AAAAGGCG m8a Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-524-3p tttGCGCCTTttatc GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-525-3p tttGCGCCTTttatc GAAGGCGC m7b Disrupted HPCB3_13606_G18531.1_189899825
hsa-miR-548an tttgcGCCTTTTatc AAAAGGCA m7a Disrupted HPCB3_13606_G18531.1_189899825

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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