SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000328
Gene Symbol: RPGR

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38285681AG>G COSM2964237 C135 [large_intestine][right][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chrX:g.38285546G>T COSM3363981 TCGA-DV-5574-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-5p tggaaTTTAAGTaac ACUUAAAC m7a Created HHFCT_164736_cluster-24248_29_8
hsa-miR-3682-5p tggaattGAAGTAac CUACUUCU m6b Disrupted HHFCT_164736_cluster-24248_29_8

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38285521C>A COSN510464
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3610 tgtgacCCGATTatg GAAUCGGA m6b Disrupted HHFCT_164735_cluster-24248_28_16
hsa-miR-3663-5p tgtGACCAGattatg GCUGGUCU m6b Created HHFCT_164735_cluster-24248_28_16
hsa-miR-5587-5p tGTGACCAgattatg AUGGUCAC m7b Created HHFCT_164735_cluster-24248_28_16

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38283573G>C COSN9487693 AOCS-106-1-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7843-5p aacaCTGCCCTCcct GAGGGCAG m8a Created HHFCT_164725_cluster-24248_16_16
hsa-miR-6883-5p aacactgCCCTCCCt AGGGAGGG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-6879-5p aacaCTGCCCTccct CAGGGCAG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-6785-5p aacactgCCCTCCCt UGGGAGGG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-6735-5p aacaCTGCCCTccct CAGGGCAG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-4436b-3p aacaCTGCCCTccct CAGGGCAG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-3616-3p aacacTGCCCTCcct CGAGGGCA m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-34c-5p aaCACTGCCctccct AGGCAGUG m7b (m6b->m7b) HHFCT_164725_cluster-24248_16_16
hsa-miR-34a-5p aaCACTGCCctccct UGGCAGUG m7b (m6b->m7b) HHFCT_164725_cluster-24248_16_16
hsa-miR-449a aaCACTGCCctccct UGGCAGUG m7b (m6b->m7b) HHFCT_164725_cluster-24248_16_16
hsa-miR-199b-5p aACACTGGcctccct CCCAGUGU m7b Disrupted HHFCT_164725_cluster-24248_16_16
hsa-miR-199a-5p aACACTGGcctccct CCCAGUGU m7b Disrupted HHFCT_164725_cluster-24248_16_16
hsa-miR-149-3p aacactgCCCTCCCt AGGGAGGG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-4728-5p aacactgCCCTCCCt UGGGAGGG m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-6499-3p aACACTGCcctccct AGCAGUGU m7b Created HHFCT_164725_cluster-24248_16_16
hsa-miR-4632-5p aacaCTGCCCTCcct GAGGGCAG m8a Created HHFCT_164725_cluster-24248_16_16
hsa-miR-449b-5p aaCACTGCCctccct AGGCAGUG m7b (m6b->m7b) HHFCT_164725_cluster-24248_16_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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