SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000321
Gene Symbol: RB1
Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465053A>G COSM551465 TCGA-CM-6161-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465049T>A COSM947802 TCGA-AP-A054-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8084 taTAGTATTCtataa GAAUACUA m8a Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-8084 taTAGTATTCtataa GAAUACUA m8a Disrupted HPCB1_11259_G14045.1_49039178

Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465047T>G COSM916 S83127 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-337-3p atTATAGGAttctat CUCCUAUA m7b (m6b->m7b) HPCB1_11259_G14045.1_49039178
hsa-miR-625-3p atTATAGTattctat GACUAUAG m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-8084 attaTAGTATTCtat GAAUACUA m8a Disrupted HPCB1_11259_G14045.1_49039178

Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465044T>TT COSM4433174 428 [oesophagus][lower_third][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-374a-5p tcTATTATAgtattc UUAUAAUA m7b (m7b->m6b) HPCB1_11259_G14045.1_49039178
hsa-miR-374b-5p tcTATTATAgtattc AUAUAAUA m7b (m7b->m6b) HPCB1_11259_G14045.1_49039178
hsa-miR-625-3p tctatTATAGTattc GACUAUAG m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-8084 tctattaTAGTATTc GAAUACUA m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-374a-5p tcTATTATAgtattc UUAUAAUA m7b (m7b->m6b) HPCB1_11259_G14045.1_49039178
hsa-miR-374b-5p tcTATTATAgtattc AUAUAAUA m7b (m7b->m6b) HPCB1_11259_G14045.1_49039178
hsa-miR-625-3p tctatTATAGTattc GACUAUAG m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-8084 tctattaTAGTATTc GAAUACUA m7b Disrupted HPCB1_11259_G14045.1_49039178

Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465043A>G COSM4386818 S01577 [lung][NS][carcinoid-endocrine_tumour][atypical]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-338-5p ttcTATTGTagtatt AACAAUAU m6b Created HPCB1_11259_G14045.1_49039178
hsa-miR-369-3p ttcTATTATagtatt AAUAAUAC m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-374a-5p ttcTATTATAgtatt UUAUAAUA m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-374b-5p ttcTATTATAgtatt AUAUAAUA m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-5692b ttcTATTATagtatt AAUAAUAU m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-5692c ttcTATTATagtatt AAUAAUAU m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-625-3p ttctatTATAGTatt GACUAUAG m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-338-5p ttcTATTGTagtatt AACAAUAU m6b Created HPCB1_11259_G14045.1_49039178
hsa-miR-369-3p ttcTATTATagtatt AAUAAUAC m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-374a-5p ttcTATTATAgtatt UUAUAAUA m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-374b-5p ttcTATTATAgtatt AUAUAAUA m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-5692b ttcTATTATagtatt AAUAAUAU m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-5692c ttcTATTATagtatt AAUAAUAU m6b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-625-3p ttctatTATAGTatt GACUAUAG m6b Disrupted HPCB1_11259_G14045.1_49039178

Mutation Mutation ID Sample Name Cancer Type
chr13:g.48465038C>A COSM1587094 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1277-5p tatgatTATATTata AAAUAUAU m6b Created HPCB1_11259_G14045.1_49039178
hsa-miR-15b-3p tATGATTCtattata CGAAUCAU m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-410-3p tatgaTTATATTata AAUAUAAC m7a Created HPCB1_11259_G14045.1_49039178
hsa-miR-5692b tatgattATATTATa AAUAAUAU m7b Created HPCB1_11259_G14045.1_49039178
hsa-miR-5692c tatgattATATTATa AAUAAUAU m7b Created HPCB1_11259_G14045.1_49039178
hsa-miR-1277-5p tatgatTATATTata AAAUAUAU m6b Created HPCB1_11259_G14045.1_49039178
hsa-miR-15b-3p tATGATTCtattata CGAAUCAU m7b Disrupted HPCB1_11259_G14045.1_49039178
hsa-miR-410-3p tatgaTTATATTata AAUAUAAC m7a Created HPCB1_11259_G14045.1_49039178
hsa-miR-5692b tatgattATATTATa AAUAAUAU m7b Created HPCB1_11259_G14045.1_49039178
hsa-miR-5692c tatgattATATTATa AAUAAUAU m7b Created HPCB1_11259_G14045.1_49039178

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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