SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000237
Gene Symbol: LPL
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.19967202A>C COSN8518660 422_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-128-3p cgtacttCACTGTGt UCACAGUG m7b Created HHFCT_153582_uc003wzk.2_14_198
hsa-miR-216a-3p cgtacttCACTGTGt UCACAGUG m7b Created HHFCT_153582_uc003wzk.2_14_198
hsa-miR-3681-3p cgtacttCACTGTGt ACACAGUG m7b Created HHFCT_153582_uc003wzk.2_14_198
hsa-miR-548ao-5p cgTACTTCactgtgt AGAAGUAA m6b Created HHFCT_153582_uc003wzk.2_14_198
hsa-miR-548ax cgTACTTCactgtgt AGAAGUAA m6b Created HHFCT_153582_uc003wzk.2_14_198
hsa-miR-5585-5p cGTACTTCActgtgt UGAAGUAC m8a (m7a->m8a) HHFCT_153582_uc003wzk.2_14_198

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19966634G>T COSN9259307 C0065T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3160-5p ctAGAAAGCtctgca GGCUUUCU m7b (m7b->m6b) HHFCT_153578_uc003wzk.2_9_146
hsa-miR-3919 ctagaaaTCTCTGCa GCAGAGAA m7a Created HHFCT_153578_uc003wzk.2_9_146
hsa-miR-4756-3p ctagaaATCTCTGca CCAGAGAU m7b Created HHFCT_153578_uc003wzk.2_9_146

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19961033C>A COSM1496852 TCGA-BP-5000-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1254 gcagTCCAGGCTtcg AGCCUGGA m8a Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-1269a gCAGTCCAGgcttcg CUGGACUG m8a (m7a->m8a) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-1269b gCAGTCCAGgcttcg CUGGACUG m8a (m7a->m8a) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-1288-3p GCAGTCCAggcttcg UGGACUGC m8a Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-3116 gcagTCCAGGCttcg UGCCUGGA m7b Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-3199 gCAGTCCCggcttcg AGGGACUG m7b Disrupted HHFCT_153573_uc003wzk.2_4_215
hsa-miR-3690 gcaGTCCAGGcttcg ACCUGGAC m7b Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378a-3p gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378b gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378c gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378d gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378e gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378f gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378h gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-378i gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-422a gcAGTCCAGgcttcg ACUGGACU m7b (m6b->m7b) HHFCT_153573_uc003wzk.2_4_215
hsa-miR-8052 gCAGTCCCGgcttcg CGGGACUG m8a (m8a->m7a) HHFCT_153573_uc003wzk.2_4_215

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19961024G>A COSM1755656 B105-0-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3977 actggTGAAGCAgtc GUGCUUCA m7b Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-412-3p actGGTGAAGcagtc ACUUCACC m7b Created HHFCT_153573_uc003wzk.2_4_215
hsa-miR-4733-3p aCTGGTGGagcagtc CCACCAGG m7a Disrupted HHFCT_153573_uc003wzk.2_4_215
hsa-miR-6754-3p actGGTGAAGcagtc UCUUCACC m7b Created HHFCT_153573_uc003wzk.2_4_215

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19951940T>C COSM604964 TCGA-38-4630-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-5p tatcAACTGGAtgga GUCCAGUU m7b Disrupted HHFCT_153572_uc003wzk.2_3_359
hsa-miR-5195-3p tatcAACTGGATgga AUCCAGUU m8a Disrupted HHFCT_153572_uc003wzk.2_3_359

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19951931T>A COSM4933166 TCGA-BW-A5NO-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1537-3p ggccCGGTTTatcaa AAAACCGU m6b Disrupted HHFCT_153572_uc003wzk.2_3_359

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19951928C>T COSM3898683 TCGA-BR-8059-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1537-3p tgtggccCGGTTTat AAAACCGU m6b Disrupted HHFCT_153572_uc003wzk.2_3_359
hsa-miR-1911-3p tgtgGCCTGGTttat CACCAGGC m7b Created HHFCT_153572_uc003wzk.2_3_359
hsa-miR-1972 tgTGGCCTGgtttat UCAGGCCA m7b (m6b->m7b) HHFCT_153572_uc003wzk.2_3_359
hsa-miR-4717-5p tGTGGCCTggtttat UAGGCCAC m7b Created HHFCT_153572_uc003wzk.2_3_359
hsa-miR-497-3p tgtggccTGGTTTat CAAACCAC m6b Created HHFCT_153572_uc003wzk.2_3_359

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19951924G>A COSM4162883 PTC-28C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-221-3p aggATGTAGCccggt AGCUACAU m7b Created HHFCT_153572_uc003wzk.2_3_359
hsa-miR-222-3p aggATGTAGCccggt AGCUACAU m7b Created HHFCT_153572_uc003wzk.2_3_359

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19951916C>A COSM39324 Br04X [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4421 ggtggGACAGGatgt ACCUGUCU m6b Disrupted HHFCT_153572_uc003wzk.2_3_359
hsa-miR-4433a-5p gGTGGGACaggatgt CGUCCCAC m7b Disrupted HHFCT_153572_uc003wzk.2_3_359
hsa-miR-4433b-5p ggTGGGACAggatgt AUGUCCCA m7b (m7b->m6b) HHFCT_153572_uc003wzk.2_3_359
hsa-miR-4793-5p ggtgggaCAGGATGt ACAUCCUG m7b Disrupted HHFCT_153572_uc003wzk.2_3_359
hsa-miR-501-5p ggtgggAAAGGATgt AAUCCUUU m7b Created HHFCT_153572_uc003wzk.2_3_359
hsa-miR-6748-3p ggtgGGACAGGAtgt UCCUGUCC m8a Disrupted HHFCT_153572_uc003wzk.2_3_359

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19948308A>T COSM2785102 HT55 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-3p tcacAGCTGCAAaac UUGCAGCU m8a Created HHFCT_153571_uc003wzk.2_2_275
hsa-miR-4660 tcacAGCTGCAaaac UGCAGCUC m7a Created HHFCT_153571_uc003wzk.2_2_275
hsa-miR-5047 tcacAGCTGCAAaac UUGCAGCU m8a Created HHFCT_153571_uc003wzk.2_2_275
hsa-miR-557 tcacagcTGCAAAac GUUUGCAC m6b Created HHFCT_153571_uc003wzk.2_2_275
hsa-miR-6516-5p tcacagCTGCAAAac UUUGCAGU m7a Created HHFCT_153571_uc003wzk.2_2_275
hsa-miR-6885-3p tcacagcAGCAAAac CUUUGCUU m6b Disrupted HHFCT_153571_uc003wzk.2_2_275
hsa-miR-7156-3p tcacaGCTGCAaaac CUGCAGCC m6b Created HHFCT_153571_uc003wzk.2_2_275

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19948237C>T COSM454274 TCGA-E2-A14V-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4711-3p gAAGACACagctgag CGUGUCUU m7b Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-511-5p gAAGACACagctgag GUGUCUUU m7a Disrupted HHFCT_153570_uc003wzk.2_1_753

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19948233G>T COSM2785099 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-223-5p ccctgAATACACagc CGUGUAUU m7b Created HHFCT_153570_uc003wzk.2_1_753
hsa-miR-4711-3p ccctgAAGACACagc CGUGUCUU m7b Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-506-5p cCCTGAATAcacagc UAUUCAGG m8a (m7a->m8a) HHFCT_153570_uc003wzk.2_1_753
hsa-miR-511-5p ccctgAAGACACagc GUGUCUUU m7a Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-630 ccctGAATACacagc AGUAUUCU m6b Created HHFCT_153570_uc003wzk.2_1_753

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19948226C>A COSM604969 TCGA-44-6778-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125a-3p taaggaCACCTGaag ACAGGUGA m6b Created HHFCT_153570_uc003wzk.2_1_753
hsa-miR-3127-5p taaggacCCCTGAag AUCAGGGC m6b Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-3934-5p taaggACACCTGAag UCAGGUGU m8a Created HHFCT_153570_uc003wzk.2_1_753
hsa-miR-615-5p taaGGACCCCtgaag GGGGGUCC m7b Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-6798-5p taaggaCCCCTGaag CCAGGGGG m6b Disrupted HHFCT_153570_uc003wzk.2_1_753
hsa-miR-764 taaggaCACCTGaag GCAGGUGC m6b Created HHFCT_153570_uc003wzk.2_1_753

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser