SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000232
Gene Symbol: SGCB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033580G>A COSM258680 TCGA-AG-3896-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3117-5p aaggAGTGTCaataa AGACACUA m6b Disrupted HHFCT_114531_cluster-17587_8_54
hsa-miR-514a-3p aaggaGTGTCAATaa AUUGACAC m8a Disrupted HHFCT_114531_cluster-17587_8_54
hsa-miR-514b-3p aaggaGTGTCAATaa AUUGACAC m8a Disrupted HHFCT_114531_cluster-17587_8_54

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033552TTTAA>A COSM290078 TCGA-AG-A014-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4453 cagtaaCAAGCTgga GAGCUUGG m6b Created HHFCT_114531_cluster-17587_8_54
hsa-miR-4538 cagtaaCAAGCTgga GAGCUUGG m6b Created HHFCT_114531_cluster-17587_8_54
hsa-miR-548at-5p cagTAACTTTaaagctgga AAAAGUUA m7b Disrupted HHFCT_114531_cluster-17587_8_54
hsa-miR-561-3p cagtAACTTTaaagctgga CAAAGUUU m6b Disrupted HHFCT_114531_cluster-17587_8_54

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033546G>T COSM447922 TCGA-BH-A0HN-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7f-2-3p aaagCTGTATAcatt CUAUACAG m7b Created HHFCT_114531_cluster-17587_8_54
hsa-miR-1185-1-3p aaagCTGTATAcatt AUAUACAG m7b Created HHFCT_114531_cluster-17587_8_54
hsa-miR-1185-2-3p aaagCTGTATAcatt AUAUACAG m7b Created HHFCT_114531_cluster-17587_8_54
hsa-miR-3713 aaagctGGATACatt GGUAUCCG m6b Disrupted HHFCT_114531_cluster-17587_8_54
hsa-miR-4789-5p aaagcTGTATACatt GUAUACAC m7a Created HHFCT_114531_cluster-17587_8_54
hsa-miR-5586-5p aaaGCTGGATAcatt UAUCCAGC m8a Disrupted HHFCT_114531_cluster-17587_8_54

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033534AT>T COSM290077 TCGA-AG-A014-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-191-5p caTTCCGTTGatgaa CAACGGAA m8a Created HHFCT_114531_cluster-17587_8_54
hsa-miR-3610 catTCCGATTgatgaa GAAUCGGA m7b Disrupted HHFCT_114531_cluster-17587_8_54
hsa-miR-95-3p cattCCGTTGAtgaa UUCAACGG m7b Created HHFCT_114531_cluster-17587_8_54

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028853C>T COSM284942 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-192-3p gtgacATTGGCAtgc CUGCCAAU m7b Created HHFCT_114530_cluster-17587_7_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028852G>A COSM1642488 pfg008T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4502 tgaCATCAGCatgca GCUGAUGA m7a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-4728-3p tgacaTCAGCATGca CAUGCUGA m8a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-8075 tgaCATCAGCAtgca UGCUGAUG m8a Created HHFCT_114530_cluster-17587_7_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028837TG>G COSM1429992 TCGA-AA-3492-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p agTTTTTTGacccgag ACAAAAAA m7b (m7b->m6b) HHFCT_114530_cluster-17587_7_12
hsa-miR-548ae-3p AGTTTTTGacccgag CAAAAACU m8a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-548ah-3p AGTTTTTGacccgag CAAAAACU m8a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-548am-3p AGTTTTTGacccgag CAAAAACU m8a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-548aq-3p AGTTTTTGacccgag CAAAAACU m8a Created HHFCT_114530_cluster-17587_7_12
hsa-miR-548j-3p AGTTTTTGacccgag CAAAAACU m8a Created HHFCT_114530_cluster-17587_7_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028806C>T COSM397799 LUAD-S01346 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4728-3p tTCAGCATagactat CAUGCUGA m7b Created HHFCT_114528_cluster-17587_5_16
hsa-miR-5008-3p ttcAGCACAGactat CCUGUGCU m7b Disrupted HHFCT_114528_cluster-17587_5_16
hsa-miR-628-5p tTCAGCATagactat AUGCUGAC m7a Created HHFCT_114528_cluster-17587_5_16
hsa-miR-6737-3p ttcAGCACAGActat UCUGUGCU m8a Disrupted HHFCT_114528_cluster-17587_5_16
hsa-miR-7157-3p ttcAGCACAGActat UCUGUGCU m8a Disrupted HHFCT_114528_cluster-17587_5_16

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028793T>G COSM277252 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6854-3p atGAAACGCAtgagt UGCGUUUC m8a Created HHFCT_114528_cluster-17587_5_16

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028787G>A COSM1055920 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4760-3p ctcATGAATTTcatt AAAUUCAU m8a Created HHFCT_114528_cluster-17587_5_16

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52021930A>G COSN2033152 RK167_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4539 taaatgtAGTTCAGg GCUGAACU m7b Disrupted HHFCT_114526_cluster-17587_3_12
hsa-miR-7158-3p taaatgTAGTTCAGg CUGAACUA m8a Disrupted HHFCT_114526_cluster-17587_3_12
hsa-miR-4539 taaatgtAGTTCAGg GCUGAACU m7b Disrupted HHFCT_114526_cluster-17587_3_12
hsa-miR-7158-3p taaatgTAGTTCAGg CUGAACUA m8a Disrupted HHFCT_114526_cluster-17587_3_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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